Contig 010088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006F20Sequence441001298 (23)emb|CDP00029.1|1e-50unnamed protein product [Coffea canephora]237010088 (4)
JMSF029A10Sequence671003718 (5)ref|XP_009622163.1|3e-30PREDICTED: homeobox protein knotted-1-like LET12 isoform X2 [Nicotiana tomentos763010088 (4)ref|XP_006470683.1|1e-69PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Citrus sinens
JMSF042J21Sequence261003718 (5)717010088 (4)ref|XP_006470683.1|5e-63PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Citrus sinens
JMSF047J24Sequence766010088 (4)emb|CBI21101.3|1e-73unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF042J21+                                                                    AA
rJMSF029A10+                         GGAGGAGCAGACACCATGGGCTTGGACCTCTGGTGCCTACTGAAA
                      ____________________________________________________________
consensus                            GGAGGAGCAGACACCATGGGCTTGGACCTCTGGTGCCTACTGAAA
 
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rJMSF042J21+          CTGAGAGGTCACTTATGGAGAGGGTGAGACAAGAACTTAAGCATGACCTCAAACAGGGGT
rJMSF029A10+          CTGAGAGGTCACTTATGGAGAGGGTGAGACAAGAACTTAAGCATGACCTCAAACAGGGGT
                      ____________________________________________________________
consensus             CTGAGAGGTCACTTATGGAGAGGGTGAGACAAGAACTTAAGCATGACCTCAAACAGGGGT
 
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rJMSF042J21+          ACAAGGAAAAGATAGCAGACATCAGAGAGGAAATTATGCGGAAAAGAAGAGCAGGGAAGC
rJMSF029A10+          ACAAGGAAAAGATAGCAGACATCAGAGAGGAAATTATGCGGAAAAGAAGAGCAGGGAAGC
                      ____________________________________________________________
consensus             ACAAGGAAAAGATAGCAGACATCAGAGAGGAAATTATGCGGAAAAGAAGAGCAGGGAAGC
 
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rJMSF042J21+          TGCCTGGTGATACTACATCTCTCTTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
rJMSF029A10+          TGCCTGGTGATACTACATCTCTCTTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
rJMSF047J24+                                 TTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
                      ____________________________________________________________
consensus             TGCCTGGTGATACTACATCTCTCTTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
 
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rJMSF042J21+          ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
rJMSF029A10+          ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
rJMSF047J24+          ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
                      ____________________________________________________________
consensus             ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
 
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rJMSF042J21+          TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
rJMSF029A10+          TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
rJMSF047J24+          TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
                      ____________________________________________________________
consensus             TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
 
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rJMSF042J21+          CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
rJMSF006F20+                    TCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
rJMSF029A10+          CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
rJMSF047J24+          CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
                      ____________________________________________________________
consensus             CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
 
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rJMSF042J21+          TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
rJMSF006F20+          TCATGTGACAACGAGATAGATCCAACAAANCAAAACATATTCCGTCTGTTTTTNTATCCA
rJMSF029A10+          TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
rJMSF047J24+          TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
                      ____________________________________________________________
consensus             TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
 
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rJMSF042J21+          AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
rJMSF006F20+          AAANTNCTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAATCCAAGCATTNCGCC
rJMSF029A10+          AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
rJMSF047J24+          AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
                      ____________________________________________________________
consensus             AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
 
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rJMSF042J21+          ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGTAAAAGTAAAATTAAACCACAGGTT
rJMSF006F20+          ACTGCTCACTTGTTTTCAGTTCACCAAAGGNTTGGCANAAGTAAAATTAAACCACAGGTT
rJMSF029A10+          ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGCAAAAGTAAAATTAAACCACAGGTT
rJMSF047J24+          ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGCAAAAGTAAAATTAAACCACAGGTT
                      ____________________________________________________________
consensus             ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGCAAAAGTAAAATTAAACCACAGGTT
 
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rJMSF042J21+          CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
rJMSF006F20+          CATCAAT                                                     
rJMSF029A10+          CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
rJMSF047J24+          CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
                      ____________________________________________________________
consensus             CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
 
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rJMSF042J21+          TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
rJMSF029A10+          TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
rJMSF047J24+          TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
                      ____________________________________________________________
consensus             TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
 
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rJMSF042J21+          GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAA    
rJMSF029A10+          GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAA    
rJMSF047J24+          GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAACAAT
                      ____________________________________________________________
consensus             GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAACAAT