Contig 010088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006F20Sequence441001298 (23)emb|CDP00029.1|1e-50unnamed protein product [Coffea canephora]237010088 (4)
JMSF029A10Sequence671003718 (5)ref|XP_009622163.1|3e-30PREDICTED: homeobox protein knotted-1-like LET12 isoform X2 [Nicotiana tomentos763010088 (4)ref|XP_006470683.1|1e-69PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Citrus sinens
JMSF042J21Sequence261003718 (5)717010088 (4)ref|XP_006470683.1|5e-63PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Citrus sinens
JMSF047J24Sequence766010088 (4)emb|CBI21101.3|1e-73unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042J21+ AA
rJMSF029A10+ GGAGGAGCAGACACCATGGGCTTGGACCTCTGGTGCCTACTGAAA
                      ____________________________________________________________
consensus GGAGGAGCAGACACCATGGGCTTGGACCTCTGGTGCCTACTGAAA
 
. : . : . : . : . : . :
rJMSF042J21+ CTGAGAGGTCACTTATGGAGAGGGTGAGACAAGAACTTAAGCATGACCTCAAACAGGGGT
rJMSF029A10+ CTGAGAGGTCACTTATGGAGAGGGTGAGACAAGAACTTAAGCATGACCTCAAACAGGGGT
                      ____________________________________________________________
consensus CTGAGAGGTCACTTATGGAGAGGGTGAGACAAGAACTTAAGCATGACCTCAAACAGGGGT
 
. : . : . : . : . : . :
rJMSF042J21+ ACAAGGAAAAGATAGCAGACATCAGAGAGGAAATTATGCGGAAAAGAAGAGCAGGGAAGC
rJMSF029A10+ ACAAGGAAAAGATAGCAGACATCAGAGAGGAAATTATGCGGAAAAGAAGAGCAGGGAAGC
                      ____________________________________________________________
consensus ACAAGGAAAAGATAGCAGACATCAGAGAGGAAATTATGCGGAAAAGAAGAGCAGGGAAGC
 
. : . : . : . : . : . :
rJMSF042J21+ TGCCTGGTGATACTACATCTCTCTTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
rJMSF029A10+ TGCCTGGTGATACTACATCTCTCTTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
rJMSF047J24+ TTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
                      ____________________________________________________________
consensus TGCCTGGTGATACTACATCTCTCTTAAAAGCATGGTGGCAATCGCATTCTAAATGGCCTT
 
. : . : . : . : . : . :
rJMSF042J21+ ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
rJMSF029A10+ ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
rJMSF047J24+ ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
                      ____________________________________________________________
consensus ATCCAACCGAGGAAGACAAAGCAAGATTAGTACAAGAAACTGGCTTGCAACTCAAACAGA
 
. : . : . : . : . : . :
rJMSF042J21+ TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
rJMSF029A10+ TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
rJMSF047J24+ TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
                      ____________________________________________________________
consensus TTAACAATTGGTTCATCAACCAAAGGAAAAGAAATTGGCATACCAATCCTTCTTCTTCAT
 
. : . : . : . : . : . :
rJMSF042J21+ CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
rJMSF006F20+ TCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
rJMSF029A10+ CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
rJMSF047J24+ CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
                      ____________________________________________________________
consensus CTTCTTCTTCTCACAAGACCAAACGCAAGAGTGCAGCTGAAAAATCCAGCACCGAGCATT
 
. : . : . : . : . : . :
rJMSF042J21+ TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
rJMSF006F20+ TCATGTGACAACGAGATAGATCCAACAAANCAAAACATATTCCGTCTGTTTTTNTATCCA
rJMSF029A10+ TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
rJMSF047J24+ TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
                      ____________________________________________________________
consensus TCATGTGACAACGAGATAGATCCAACAAAACAAAACATATTCCGTCTGTTTTTCTATCCA
 
. : . : . : . : . : . :
rJMSF042J21+ AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
rJMSF006F20+ AAANTNCTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAATCCAAGCATTNCGCC
rJMSF029A10+ AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
rJMSF047J24+ AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
                      ____________________________________________________________
consensus AAACTACTTAAAGCAGAGCAAAGCAGAGCATACAAGATTCAAGAA-CCAAGCATTACGCC
 
. : . : . : . : . : . :
rJMSF042J21+ ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGTAAAAGTAAAATTAAACCACAGGTT
rJMSF006F20+ ACTGCTCACTTGTTTTCAGTTCACCAAAGGNTTGGCANAAGTAAAATTAAACCACAGGTT
rJMSF029A10+ ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGCAAAAGTAAAATTAAACCACAGGTT
rJMSF047J24+ ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGCAAAAGTAAAATTAAACCACAGGTT
                      ____________________________________________________________
consensus ACTGCTCACTTGTTTTCAGTTCACCAAAGGTTTGGCAAAAGTAAAATTAAACCACAGGTT
 
. : . : . : . : . : . :
rJMSF042J21+ CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
rJMSF006F20+ CATCAAT
rJMSF029A10+ CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
rJMSF047J24+ CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
                      ____________________________________________________________
consensus CATCAATTCTAGTTGACTAGATTATGCTCGTGTCGTGTCCAGAATATATATATAGATTTA
 
. : . : . : . : . : . :
rJMSF042J21+ TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
rJMSF029A10+ TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
rJMSF047J24+ TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
                      ____________________________________________________________
consensus TGGGGGATTTCACTGGGGTACCATGTTTTTTTGTTAGCACAAGTAGGAGGTGTAGATTAT
 
. : . : . : . : . : . :
rJMSF042J21+ GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAA
rJMSF029A10+ GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAA
rJMSF047J24+ GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAACAAT
                      ____________________________________________________________
consensus GGTTAGGGGCTCCAGCTAGTTTATATAATAATAATACTACTAATGTACTGCATCAACAAT