Contig 010086:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F02Sequence401013540 (2)ref|NP_001057345.1|2e-43Os06g0266100 [Oryza sativa Japonica Group] dbj|BAF19259.1| Os06g0266100, partial732010086 (2)ref|NP_001234444.1|1e-5330S ribosomal protein S16 [Solanum lycopersicum] dbj|BAG49073.1| 30S ribosomal p
JMSF047E06Sequence660013540 (2)gb|ADB85304.1|8e-80putative retrotransposon protein [Phyllostachys edulis]806010086 (2)ref|NP_001234444.1|4e-5230S ribosomal protein S16 [Solanum lycopersicum] dbj|BAG49073.1| 30S ribosomal p

Alignment

This contig is upended


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rJMSF047E06+                                           TCATCGGTTTGGAAGCTCTGATACCAG
                      ____________________________________________________________
consensus                                              TCATCGGTTTGGAAGCTCTGATACCAG
 
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rJMSF047E06+          CTGTAATGGGTTTGCTTGAGTGGTAATAGNATTCCGGAAGAAGAAGAAGAGAAAGTGAAT
                      ____________________________________________________________
consensus             CTGTAATGGGTTTGCTTGAGTGGTAATAGNATTCCGGAAGAAGAAGAAGAGAAAGTGAAT
 
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rJMSF002F02+           AAAGTCGGTAGATTATTCAACGNAAAGATCTCTCTGCTTACAAGAAGTGACAACAATAT
rJMSF047E06+          TAAAGTCGGTAGATTATTCAACG-AAAGATCTCTCTGCTTACAAGAAGTGACAACAATAT
                      ____________________________________________________________
consensus             TAAAGTCGGTAGATTATTCAACGNAAAGATCTCTCTGCTTACAAGAAGTGACAACAATAT
 
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rJMSF002F02+          TCTAACTAATCAGGGGTACAATTGTCCTTGCATACTCTAACTGCCTCTAACTGTAAAACG
rJMSF047E06+          TCTAACTAATCAGGGGTACAATTGTCCTTGCATACTCTAACTGCCTCTAACTGTAAAACG
                      ____________________________________________________________
consensus             TCTAACTAATCAGGGGTACAATTGTCCTTGCATACTCTAACTGCCTCTAACTGTAAAACG
 
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rJMSF002F02+          CTGCGTTTGACAATGGGGTTTGTTACAAATTAGTAAAAAATCTAAAAATTAATAATTTCT
rJMSF047E06+          CTGCGTTTGACAATGGGGTTTGTTACAAATTAGTAAAAAATCTAAAAATTAATAATTTCT
                      ____________________________________________________________
consensus             CTGCGTTTGACAATGGGGTTTGTTACAAATTAGTAAAAAATCTAAAAATTAATAATTTCT
 
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rJMSF002F02+          TCCTTATCATTTGTAATCTTTGTATCACCCCTAACCCCAGTCGTCGATTCCATTTTATCA
rJMSF047E06+          TCCTTATCATTTGTAATCTTTGTATCACCCCTAACCCCAGTCGTCGATTCCATTTTATCA
                      ____________________________________________________________
consensus             TCCTTATCATTTGTAATCTTTGTATCACCCCTAACCCCAGTCGTCGATTCCATTTTATCA
 
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rJMSF002F02+          TAAGAACGGAGAGGGCATATACATCTGCAAAAATGGTGGTTAGGCTGAGATTGTCGAGGT
rJMSF047E06+          TAAGAACGGAGAGGGCATATACATCTGCAAAAATGGTGGTTAGGCTGAGATTGTCGAGGT
                      ____________________________________________________________
consensus             TAAGAACGGAGAGGGCATATACATCTGCAAAAATGGTGGTTAGGCTGAGATTGTCGAGGT
 
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rJMSF002F02+          TCGGGTGCAAGAACAAGCCATTCTACAGAGTGATGGCTGCCGACGGCAGATCTCCCAGAG
rJMSF047E06+          TCGGGTGCAAGAACAAGCCATTCTACAGAGTGATGGCTGCCGACGGCAGATCTCCCAGAG
                      ____________________________________________________________
consensus             TCGGGTGCAAGAACAAGCCATTCTACAGAGTGATGGCTGCCGACGGCAGATCTCCCAGAG
 
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rJMSF002F02+          ACGGCAAGCATTTGGAAGTCCTCGGTTACTATAACCCCCTACCAGGTCAAGATGGTGGGA
rJMSF047E06+          ACGGCAAGCATTTGGAAGTCCTCGGTTACTATAACCCCCTACCAGGTCAAGATGGTGGGA
                      ____________________________________________________________
consensus             ACGGCAAGCATTTGGAAGTCCTCGGTTACTATAACCCCCTACCAGGTCAAGATGGTGGGA
 
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rJMSF002F02+          AACAAATGGGTCTTAATTTTGAACGGGTGAAATACTGGCTATCAGTTGGTGCACAGCCAT
rJMSF047E06+          AACAAATGGGTCTTAATTTTGAACGGGTGAAATACTGGCTATCAGTTGGTGCACAGCCAT
                      ____________________________________________________________
consensus             AACAAATGGGTCTTAATTTTGAACGGGTGAAATACTGGCTATCAGTTGGTGCACAGCCAT
 
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rJMSF002F02+          CGGATCCAGTTGAGCGTCTTCTCTTTAGAGCAGGCTTGTTGCCACCACCACCAATGATGG
rJMSF047E06+          CGGATCCAGTTGAGCGTCTTCTCTTTAGAGCAGGCTTGTTGCCACCACCACCAATGATGG
                      ____________________________________________________________
consensus             CGGATCCAGTTGAGCGTCTTCTCTTTAGAGCAGGCTTGTTGCCACCACCACCAATGATGG
 
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rJMSF002F02+          CCATGGGACGAAAAGGTGGACCGCGAGACAATCGTCAGGTTGATCCTATGACGGGGCATG
rJMSF047E06+          CCATGGGACGAAAAGGTGGACCGCGAGACAATCGTCAGGTTGATCTTATGACGGGGCATG
                      ____________________________________________________________
consensus             CCATGGGACGAAAAGGTGGACCGCGAGACAATCGTCAGGTTGATCTTATGACGGGGCATG
 
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rJMSF002F02+          TCACATTTCAGAACTCTAAAAATGATCAAAAAGCTTAGCTTCCCATGTAGCGAATGAAGG
rJMSF047E06+          TCACATTTCAGAACTCTAAAAATGATCAAAAAGCTTAGCTTCCCATGTAGCGAATGAAGG
                      ____________________________________________________________
consensus             TCACATTTCAGAACTCTAAAAATGATCAAAAAGCTTAGCTTCCCATGTAGCGAATGAAGG
 
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rJMSF002F02+          TCTGTAATCTATTCCTGAAAATCAAAGTATTGGACTATCCTAAAAGATGTACTTCTCTT 
rJMSF047E06+          TCTGTAATCTATTCCTGAAAATCAAAGTATTGGACTATCCTAAAAGATGTACTTCTCTTT
                      ____________________________________________________________
consensus             TCTGTAATCTATTCCTGAAAATCAAAGTATTGGACTATCCTAAAAGATGTACTTCTCTTT