Contig 010081:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027I18Sequence626012153 (3)ref|XP_004238963.1|2e-85PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 729010081 (3)ref|XP_004238963.1|1e-55PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990
JMSF037L12Sequence702012153 (3)ref|XP_004238963.1|3e-116PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 729010081 (3)ref|XP_004238963.1|6e-57PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990
JMSF045F04Sequence718012153 (3)ref|XP_004238963.1|2e-96PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990 764010081 (3)ref|XP_004238963.1|2e-54PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g28990

Alignment

This contig is upended


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rJMSF027I18+                                                                     C
rJMSF037L12+                                                                     C
rJMSF045F04+                          GCAACTCATGTTATTAAATGGCCATTCACTAGAAGGAAGAGTCC
                      ____________________________________________________________
consensus                             GCAACTCATGTTATTAAATGGCCATTCACTAGAAGGAAGAGTCC
 
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rJMSF027I18+          CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
rJMSF037L12+          CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
rJMSF045F04+          CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
                      ____________________________________________________________
consensus             CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
 
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rJMSF027I18+          GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
rJMSF037L12+          GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
rJMSF045F04+          GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
                      ____________________________________________________________
consensus             GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
 
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rJMSF027I18+          TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
rJMSF037L12+          TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
rJMSF045F04+          TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
                      ____________________________________________________________
consensus             TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
 
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rJMSF027I18+          TGCTTGAGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
rJMSF037L12+          TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
rJMSF045F04+          TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
                      ____________________________________________________________
consensus             TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
 
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rJMSF027I18+          GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
rJMSF037L12+          GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
rJMSF045F04+          GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
                      ____________________________________________________________
consensus             GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
 
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rJMSF027I18+          CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
rJMSF037L12+          CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
rJMSF045F04+          CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
                      ____________________________________________________________
consensus             CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
 
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rJMSF027I18+          CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
rJMSF037L12+          CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
rJMSF045F04+          CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
                      ____________________________________________________________
consensus             CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
 
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rJMSF027I18+          AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
rJMSF037L12+          AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
rJMSF045F04+          AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
                      ____________________________________________________________
consensus             AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
 
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rJMSF027I18+          CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
rJMSF037L12+          CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
rJMSF045F04+          CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
                      ____________________________________________________________
consensus             CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
 
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rJMSF027I18+          TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
rJMSF037L12+          TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
rJMSF045F04+          TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
                      ____________________________________________________________
consensus             TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
 
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rJMSF027I18+          AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
rJMSF037L12+          AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
rJMSF045F04+          AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
                      ____________________________________________________________
consensus             AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
 
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rJMSF027I18+          TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATT    
rJMSF037L12+          TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATT    
rJMSF045F04+          TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATTTGTA
                      ____________________________________________________________
consensus             TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATTTGTA