Contig 010078:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044N20Sequence713010078 (2)ref|XP_009766831.1|3e-103PREDICTED: uncharacterized protein LOC104218128 isoform X2 [Nicotiana sylvestri701010078 (2)ref|XP_009125070.1|9e-69PREDICTED: uncharacterized protein LOC103850110 isoform X2 [Brassica rapa]

Alignment

This contig is upended


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JMSF044N20-                                                             GACTGATAAT
                      ____________________________________________________________
consensus                                                               GACTGATAAT
 
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JMSF044N20-           CATGGCTGCTTCTCTCGGGACCTTAGGTCTCCTCAATGTTCCCTATACCAGAATGAAAAT
                      ____________________________________________________________
consensus             CATGGCTGCTTCTCTCGGGACCTTAGGTCTCCTCAATGTTCCCTATACCAGAATGAAAAT
 
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JMSF044N20-           GAGACCCCAAGCTGTCCTCACCAAAGACTGCAAAATGGGTGTTCCGTATGAGCTGAAACA
                      ____________________________________________________________
consensus             GAGACCCCAAGCTGTCCTCACCAAAGACTGCAAAATGGGTGTTCCGTATGAGCTGAAACA
 
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JMSF044N20-           AGGCCAGTCGCGTCTTTTCCACAAGCTTCCTTCCGGTCTGAACATGGAGGTTATTTTCCA
                      ____________________________________________________________
consensus             AGGCCAGTCGCGTCTTTTCCACAAGCTTCCTTCCGGTCTGAACATGGAGGTTATTTTCCA
 
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JMSF044N20-           GAAGGGTGACCCAGACAAGGAAATAGATAAACCTCATAACCCACCACTAGTATTCGTCCA
                      ____________________________________________________________
consensus             GAAGGGTGACCCAGACAAGGAAATAGATAAACCTCATAACCCACCACTAGTATTCGTCCA
 
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JMSF044N20-           TGGAAGTTTCCATGCGGCTTGGTGCTGGGCTGAACACTGGTTACCCTTCTTTTCCCAGAA
                      ____________________________________________________________
consensus             TGGAAGTTTCCATGCGGCTTGGTGCTGGGCTGAACACTGGTTACCCTTCTTTTCCCAGAA
 
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JMSF044N20-           TGGATTTGATTGCTACGCTGTCAGTCTTTTGGGCCAGGGTGAAAGTGATGCACCTGCTGC
                      ____________________________________________________________
consensus             TGGATTTGATTGCTACGCTGTCAGTCTTTTGGGCCAGGGTGAAAGTGATGCACCTGCTGC
 
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JMSF044N20-           TTCGGTTGCTGGTTCCCTCCAGTAGACACATGCAGGTGATATTGCTGACTTTATCCATAA
rJMSF044N20+                                 AGACACATGCAGGTGATATTGCTGACTTTATCCATAA
                      ____________________________________________________________
consensus             TTCGGTTGCTGGTTCCCTCCAGTAGACACATGCAGGTGATATTGCTGACTTTATCCATAA
 
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JMSF044N20-           AGAAATTAGGCTGCCACCTGTCTTGCTCGGGCATTCATTTGGAGGGCTTATTGTGCAGTA
rJMSF044N20+          AGAAATTAGGCTGCCACCTGTCTTGCTCGGGCATTCATTTGGAGGGCTTATTGTGCAGTA
                      ____________________________________________________________
consensus             AGAAATTAGGCTGCCACCTGTCTTGCTCGGGCATTCATTTGGAGGGCTTATTGTGCAGTA
 
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JMSF044N20-           TTATATTGCAAATCTACCGAGGGGAAAAGAAAGAGAAAACAAAGGCCTATATCCCAATCT
rJMSF044N20+          TTATATTGCAAATCTACCGAGGGGAAAAGAAAGAGAAAACAAAGGCCTATATCCCAATCT
                      ____________________________________________________________
consensus             TTATATTGCAAATCTACCGAGGGGAAAAGAAAGAGAAAACAAAGGCCTATATCCCAATCT
 
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JMSF044N20-           TTCTGGAGCTGCGCTTGTTTGCTCTGTGCCTCCGTCGGGTAATAGGTAACAAGGAGCCTG
rJMSF044N20+          TTCTGGAGCTGCGCTTGTTTGCTCTGTGCCTCCGTCGGGTAATAGGTAACAAGGAGCCTG
                      ____________________________________________________________
consensus             TTCTGGAGCTGCGCTTGTTTGCTCTGTGCCTCCGTCGGGTAATAGGTAACAAGGAGCCTG
 
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JMSF044N20-           GCGGCGAAAGCTTTCCAAACCTCCCTACCTCTTTGTAAAGAAACATTTTTTTATGCGACA
rJMSF044N20+          GCGGCGAAAGCTTTCCAAACCTCCCTACCTCTTTGTAAAGAAACATTTTTTTATGCGACA
                      ____________________________________________________________
consensus             GCGGCGAAAGCTTTCCAAACCTCCCTACCTCTTTGTAAAGAAACATTTTTTTATGCGACA
 
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JMSF044N20-           ATGGATGATCAGCTGGTCCTTCGTTACCAAAAGCTGATGACTG                 
rJMSF044N20+          ATGGATGATCAGCTGGTCCTTCGTTACCAAAAGCTGATGACTGAAAGTTCGAGGTTGCCA
                      ____________________________________________________________
consensus             ATGGATGATCAGCTGGTCCTTCGTTACCAAAAGCTGATGACTGAAAGTTCGAGGTTGCCA
 
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rJMSF044N20+          TTGTTTGATCTGAGAAAGCTGAATGCATCACTCCCTGTCCCTCCATTGGCAGATTCTTCG
                      ____________________________________________________________
consensus             TTGTTTGATCTGAGAAAGCTGAATGCATCACTCCCTGTCCCTCCATTGGCAGATTCTTCG
 
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rJMSF044N20+          TTGAAAGTTCTTGTATTGGGTGCGAAGGATGATTTCATAGTGGATTTCGAGGGGCTCGAT
                      ____________________________________________________________
consensus             TTGAAAGTTCTTGTATTGGGTGCGAAGGATGATTTCATAGTGGATTTCGAGGGGCTCGAT
 
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rJMSF044N20+          GAAACGGGAAGGTTTTATGGAGTATCACCTGTCTGCATCGAAGGAGTTGCCCACGACTTG
                      ____________________________________________________________
consensus             GAAACGGGAAGGTTTTATGGAGTATCACCTGTCTGCATCGAAGGAGTTGCCCACGACTTG
 
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rJMSF044N20+          ATGTTAGATTGCTCATGGCAAAAGGGTGCAGAAGAAATTTTGTTATGGTTGAGTAGATTG
                      ____________________________________________________________
consensus             ATGTTAGATTGCTCATGGCAAAAGGGTGCAGAAGAAATTTTGTTATGGTTGAGTAGATTG
 
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rJMSF044N20+          AATTAGATGGAAATATGAGTGTGGGGGAAACTGGCCCAGATTTACCAATCTGCAACTTCT
                      ____________________________________________________________
consensus             AATTAGATGGAAATATGAGTGTGGGGGAAACTGGCCCAGATTTACCAATCTGCAACTTCT
 
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rJMSF044N20+          CTTTATAGATAGATGCATTGAGATGGCTGGTTTCTTTTGCATGTTCCCAGTAAACTTTGT
                      ____________________________________________________________
consensus             CTTTATAGATAGATGCATTGAGATGGCTGGTTTCTTTTGCATGTTCCCAGTAAACTTTGT