| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF036B11 | Sequence | 659 | 006684 (3) | ref|XP_011044648.1| | 1e-27 | PREDICTED: starch synthase 1, chloroplastic/amyloplastic isoform X2 [Populus eu | 733 | 010073 (3) | emb|CDP05054.1| | 1e-69 | unnamed protein product [Coffea canephora] |
| JMSF043P11 | Sequence | 716 | 006684 (3) | ref|XP_006350536.1| | 5e-38 | PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X | 602 | 010073 (3) | emb|CDP05054.1| | 6e-52 | unnamed protein product [Coffea canephora] |
| JMSF049E06 | Sequence | 668 | 006684 (3) | ref|XP_006350536.1| | 3e-29 | PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X | 760 | 010073 (3) | ref|XP_009624828.1| | 3e-98 | PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic isoform X4 [Ni |
This contig is upended
. : . : . : . : . : . :
rJMSF049E06+ AACTAATGAATGATGATGTCCAATTTGTAATGCTTGGGTCCGGTGA
____________________________________________________________
consensus AACTAATGAATGATGATGTCCAATTTGTAATGCTTGGGTCCGGTGA
. : . : . : . : . : . :
rJMSF049E06+ GAAACAGTACGAGGACTGGATGAGATATATGGAGTCACAATATCAAGATAAGTTCCGAGG
rJMSF036B11+ CAGTACGAGGACTGGATGAGATATATGGAGTCACAATATCAAGATAAGTTCCGAGG
____________________________________________________________
consensus GAAACAGTACGAGGACTGGATGAGATATATGGAGTCACAATATCAAGATAAGTTCCGAGG
. : . : . : . : . : . :
rJMSF049E06+ ATGGGTTGGATTCAACGTGCCTATTTCGCATAGGATAACAGC-GGGCTGTGACATCCTAT
rJMSF036B11+ ATGGGTTGGATTCAACGTGCCTATTTCGCATAGGATAACAGCGGGGCTGTGACATCCTAT
rJMSF043P11+ AT
____________________________________________________________
consensus ATGGGTTGGATTCAACGTGCCTATTTCGCATAGGATAACAGCGGGGCTGTGACATCCTAT
. : . : . : . : . : . :
rJMSF049E06+ TAATGCCTTCGAGATTTGAACCGTGTGGCTT-AAACCAGTTGTACGCGATGAGATATGGC
rJMSF036B11+ TAATGCCTTCGAGATTTGAACCGTGTGGCTT-AAACCAGTTGTACGCGATGAGATATGGC
rJMSF043P11+ TAATGCCTTCGAGATTTGAACCGTGTGGCTTNAAACCAGTTGTACGCGATGAGATATGGC
____________________________________________________________
consensus TAATGCCTTCGAGATTTGAACCGTGTGGCTT-AAACCAGTTGTACGCGATGAGATATGGC
. : . : . : . : . : . :
rJMSF049E06+ ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
rJMSF036B11+ ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
rJMSF043P11+ ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
____________________________________________________________
consensus ACCGTGCCCGTTGTTCATAATACCGGGGGCCTACGGGATACGGTGGAATCTTTTGACCCG
. : . : . : . : . : . :
rJMSF049E06+ TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
rJMSF036B11+ TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
rJMSF043P11+ TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
____________________________________________________________
consensus TATGCTGAGGATGGCAGCGGTGCAGGCACCGGGTGGGCATTTTCTCCTCTATCAAGAGAA
. : . : . : . : . : . :
rJMSF049E06+ AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
rJMSF036B11+ AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
rJMSF043P11+ AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
____________________________________________________________
consensus AATCTGTTGGCTACACTTAGAATAGCTACCGGGACTTATACCGAACACAAACAATCGTGG
. : . : . : . : . : . :
rJMSF049E06+ AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
rJMSF036B11+ AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
rJMSF043P11+ AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
____________________________________________________________
consensus AAGGGATTGATGCAGAGGGGAATGGCGAGGGATTATTCGTGGGAAAACGCAGCGGTTCAA
. : . : . : . : . : . :
rJMSF049E06+ TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
rJMSF036B11+ TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
rJMSF043P11+ TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
____________________________________________________________
consensus TATGAACAAATCTTTGGATGGGCCTTCATGGACCCCCCATATGTTAGATGGCCGAACTAG
. : . : . : . : . : . :
rJMSF049E06+ AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
rJMSF036B11+ AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
rJMSF043P11+ AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
____________________________________________________________
consensus AAAGAACTGGTGCTACCAAACGAGCAAAGCATGATTTCTTGATTTTCCATCGGGACTAAA
. : . : . : . : . : . :
rJMSF049E06+ TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
rJMSF036B11+ TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
rJMSF043P11+ TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
____________________________________________________________
consensus TCCCCGTGATAGATTCATAGCTCGTGGTGCGATAGCAGTGAGTTATGCTGCGCCATTCTT
. : . : . : . : . : . :
rJMSF049E06+ TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
rJMSF036B11+ TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
rJMSF043P11+ TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
____________________________________________________________
consensus TTTTGTCGAACCGGCTTCTTTCTGATGTCTCTATAGCGCACTAGCATAGTTGGAGAAAGG
. : . : . : . : . : . :
rJMSF049E06+ GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAAT
rJMSF036B11+ GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAAT
rJMSF043P11+ GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAATTGTAAAAACCATCAT
____________________________________________________________
consensus GTTTTTTGTGTGTAGAACATAGAGCCCTCCCATGTGACAACAAATTGTAAAAACCATCAT