Contig 010065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019N21Sequence543000186 (4)723010065 (3)ref|XP_009593728.1|2e-93PREDICTED: probable receptor-like protein kinase At5g18500 [Nicotiana tomentosi
JMFS033F03Sequence618010065 (3)ref|XP_011039031.1|9e-122PREDICTED: probable receptor-like protein kinase At5g18500 [Populus euphratica]
JMSF042L23Sequence724000186 (4)ref|XP_011092198.1|2e-49PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At5g18500701010065 (3)ref|XP_009593728.1|1e-74PREDICTED: probable receptor-like protein kinase At5g18500 [Nicotiana tomentosi

Alignment

This contig is upended


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JMFS033F03-                              TCCTCAACAACCTAGGCCAGGCAGAGAAAGAATTTAGATAG
                      ____________________________________________________________
consensus                                TCCTCAACAACCTAGGCCAGGCAGAGAAAGAATTTAGATAG
 
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JMFS033F03-           CTACTTCAGCCCCATTGATCAATTGGGCTGAAGTAGCTATCAAGAAGCTCCTCAACAACC
                      ____________________________________________________________
consensus             CTACTTCAGCCCCATTGATCAATTGGGCTGAAGTAGCTATCAAGAAGCTCCTCAACAACC
 
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JMFS033F03-           TAGGCCAGGCAGAGAAAGAATTTAGAGTGGAAGTCGAAGCCATTGGCCATGTGCGACATA
                      ____________________________________________________________
consensus             TAGGCCAGGCAGAGAAAGAATTTAGAGTGGAAGTCGAAGCCATTGGCCATGTGCGACATA
 
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JMFS033F03-           AACACTTAGTTCGCCTTTTGGGATACTGCATTGAAGGAACTCATAGGATTCTGGTCTATG
                      ____________________________________________________________
consensus             AACACTTAGTTCGCCTTTTGGGATACTGCATTGAAGGAACTCATAGGATTCTGGTCTATG
 
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JMFS033F03-           AGTATGTAAACAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCAGCAACACGGAT
                      ____________________________________________________________
consensus             AGTATGTAAACAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCAGCAACACGGAT
 
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JMFS033F03-           ATCTTACATGGGAAGCGAGGATGAAGGTTCTCCTTGGCACAGCTAAGGCTCTTGCGTACT
                      ____________________________________________________________
consensus             ATCTTACATGGGAAGCGAGGATGAAGGTTCTCCTTGGCACAGCTAAGGCTCTTGCGTACT
 
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JMFS033F03-           TGCACGAGAACATCGAGCCAAAGGTGGTTCATCGGGACATCAAATCAAGCAATATTCTAA
                      ____________________________________________________________
consensus             TGCACGAGAACATCGAGCCAAAGGTGGTTCATCGGGACATCAAATCAAGCAATATTCTAA
 
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JMFS033F03-           TAGACGACGAGTTCAACGCTAAGGTCTCGGACTTTGGTCTTGCTAAGCTGCTGGGTGCTG
                      ____________________________________________________________
consensus             TAGACGACGAGTTCAACGCTAAGGTCTCGGACTTTGGTCTTGCTAAGCTGCTGGGTGCTG
 
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JMFS033F03-           GGAAAAGCCACATCTCGACAAGAGTCATGGGTACTTTTGGATATGTGGCTCCTGAATATG
rJMFF019N21+                      TCTCGACAAGAGTCATGGGTACTTTTGGATATGTGGCTCCTGAATATG
                      ____________________________________________________________
consensus             GGAAAAGCCACATCTCGACAAGAGTCATGGGTACTTTTGGATATGTGGCTCCTGAATATG
 
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JMFS033F03-           CAAATACGGGGCTCTTGAATGAAAAGAGTGACGTTTACAGCTTTGGAGTTGTTCTGTTAG
rJMFF019N21+          CAAATACGGGGCTCTTGAATGAAAAGAGTGACGTTTACAGCTTTGGAGTTGTTCTGTTAG
rJMSF042L23+                                                                  TTAG
                      ____________________________________________________________
consensus             CAAATACGGGGCTCTTGAATGAAAAGAGTGACGTTTACAGCTTTGGAGTTGTTCTGTTAG
 
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JMFS033F03-           AAGCTATTACCGGAAGAGACCCAGTGGACTACGGCCG                       
rJMFF019N21+          AAGCTATTACCGGAAGAGACCCAGTGGACTACGGCCGTCCTGCTCAAGAGGTGAATCTCG
rJMSF042L23+          AAGCTATTACCGGAAGAGACCCAGTGGACTACGGCCGTCCTGCTCAAGAGGTGAATCTCG
                      ____________________________________________________________
consensus             AAGCTATTACCGGAAGAGACCCAGTGGACTACGGCCGTCCTGCTCAAGAGGTGAATCTCG
 
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rJMFF019N21+          TTGATTGGCTGAAAATGATGGTTGGAAGCAGGCGCTCCGAGGAAGTTGTTGACCCAAATA
rJMSF042L23+          TTGATTGGCTGAAAATGATGGTTGGAAGCAGGCGCTCCGAGGAAGTTGTTGACCCAAATA
                      ____________________________________________________________
consensus             TTGATTGGCTGAAAATGATGGTTGGAAGCAGGCGCTCCGAGGAAGTTGTTGACCCAAATA
 
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rJMFF019N21+          TCGGTTCAAGGCCATCAACAAGGGCTTTTAAGCGAGCCCTTTTGACTGCTTTGAGATGCG
rJMSF042L23+          TCGGTTCAAGGCCATCAACAAGGGCTTTTAAGCGAGCCCTTTTGACTGCTTTGAGATGCG
                      ____________________________________________________________
consensus             TCGGTTCAAGGCCATCAACAAGGGCTTTTAAGCGAGCCCTTTTGACTGCTTTGAGATGCG
 
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rJMFF019N21+          TTGATCCAGATTCTGACAAGAGACCCAAGATGAGCCAAGTCGTTCGTATGCTTGAATCAG
rJMSF042L23+          TTGATCCAGATTCTGACAAGAGACCCAAGATGAGCCAAGTCGTTCGTATGCTTGAATCAG
                      ____________________________________________________________
consensus             TTGATCCAGATTCTGACAAGAGACCCAAGATGAGCCAAGTCGTTCGTATGCTTGAATCAG
 
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rJMFF019N21+          AAGAATATCCTATACCAAGAGAGGACCGTAGGCAGCGAAAAATCCAGGCAGGTGCAGCCG
rJMSF042L23+          AAGAATATCCTATACCAAGAGAGGACCGTAGGCAGCGAAAAATCCAGGCAGGTGCAGCCG
                      ____________________________________________________________
consensus             AAGAATATCCTATACCAAGAGAGGACCGTAGGCAGCGAAAAATCCAGGCAGGTGCAGCCG
 
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rJMFF019N21+          AGAGTGAACCCCAGCGAGAGAACTACGAGACTGACAAGAGCGACAACCCAGATTCAACAT
rJMSF042L23+          AGAGTGAACCCCAGCGAGAGAACTACGAGACTGACAAGAGCGACAACCCAGATTCAACAT
                      ____________________________________________________________
consensus             AGAGTGAACCCCAGCGAGAGAACTACGAGACTGACAAGAGCGACAACCCAGATTCAACAT
 
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rJMFF019N21+          CGGACAACAAAGGGAATCTTTAAAGCGTGAGAAAAGATGTCCACATTGAAGCATTTTGAG
rJMSF042L23+          CGGACAACAAAGGGAATCTTTAAAGCGTGAGAAAAGATGTCCACATTGAAGCATTTTGAG
                      ____________________________________________________________
consensus             CGGACAACAAAGGGAATCTTTAAAGCGTGAGAAAAGATGTCCACATTGAAGCATTTTGAG
 
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rJMFF019N21+          ATCACGATCGCCAACCAAGTTCCATTCTGAATGTTTGATCTGCCATCTACACAGCCTAAA
rJMSF042L23+          ATCACGATCGCCAACCAAGTTCCATTCTGAATGTTTGATCTGCCATCTACACAGCCTAAA
                      ____________________________________________________________
consensus             ATCACGATCGCCAACCAAGTTCCATTCTGAATGTTTGATCTGCCATCTACACAGCCTAAA
 
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rJMFF019N21+          GCTGGGGGGAGGACATTGAATTGGTTGAAACCATAAAAAATAGATAGGGTTTTCATATAT
rJMSF042L23+          GCTGGGGGGAGGACATTGAATTGGTTGAAACCATAAAAAATAGATAGGGTTTTCATATAT
                      ____________________________________________________________
consensus             GCTGGGGGGAGGACATTGAATTGGTTGAAACCATAAAAAATAGATAGGGTTTTCATATAT
 
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rJMFF019N21+          TCTTCCATTTTGGAAAATTCTTGATTGTATGCAAAAGATAGATAGGAAAATGAATGGTGT
rJMSF042L23+          TCTTCCATTTTGGAAAATTCTTGATTGTATGCAAAAGATAGATAGGAAAATGAATGGTGT
                      ____________________________________________________________
consensus             TCTTCCATTTTGGAAAATTCTTGATTGTATGCAAAAGATAGATAGGAAAATGAATGGTGT
 
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rJMFF019N21+          ATGAAAGTGGTGGCC                                             
rJMSF042L23+          ATGAAAGTGGTGGCCTTGTGAAGATGATATTTTCAGGAGGGTTGTGTACAGAAAATACTT
                      ____________________________________________________________
consensus             ATGAAAGTGGTGGCCTTGTGAAGATGATATTTTCAGGAGGGTTGTGTACAGAAAATACTT