Contig 010063:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010F10Sequence570002405 (2)ref|XP_009625584.1|4e-86PREDICTED: histone deacetylase 8 isoform X2 [Nicotiana tomentosiformis]753010063 (2)ref|XP_009625583.1|1e-76PREDICTED: histone deacetylase 8 isoform X1 [Nicotiana tomentosiformis]
JMSF042K13Sequence821002405 (2)ref|XP_009625584.1|6e-141PREDICTED: histone deacetylase 8 isoform X2 [Nicotiana tomentosiformis]838010063 (2)ref|XP_009804418.1|1e-61PREDICTED: histone deacetylase 8 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+           TTCGGGTATAATTTGAATGTCCCTTTGCCCAATGGAACAGGAGATAGGGGCTACGGTTA
                      ____________________________________________________________
consensus              TTCGGGTATAATTTGAATGTCCCTTTGCCCAATGGAACAGGAGATAGGGGCTACGGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          TGCCATGGCACATTTAGTCGTCCNTGCAGTTCAGAAGTTTGAGCCCGATATGATCGTTTT
rJMSF042K13+            CCATGGCACATTTAGTCGTCCCTGCAGTTCAGAAGTTTGAGCCCGATATGATCGTTTT
                      ____________________________________________________________
consensus             TGCCATGGCACATTTAGTCGTCCCTGCAGTTCAGAAGTTTGAGCCCGATATGATCGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          TGTTGTTGGCCTGGATTCAAGTGCATTTGATCCCAATGGAAGGCAGTGCTTGAGCATGGA
rJMSF042K13+          TGTTGTTGGCCTGGATTCAAGTGCATTTGATCCCAATGGAAGGCAGTGCTTGAGCATGGA
                      ____________________________________________________________
consensus             TGTTGTTGGCCTGGATTCAAGTGCATTTGATCCCAATGGAAGGCAGTGCTTGAGCATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          GGGTTACAGGGAGATAGGGCGGGGTGTTCGCGCCATTGCTGACAAATATAGCAAGGGGAA
rJMSF042K13+          GGGTTACAGGGAGATAGGGCGGGGTGTTCGCGCCATTGCTGACAAATATAGCAAGGGGAA
                      ____________________________________________________________
consensus             GGGTTACAGGGAGATAGGGCGGGGTGTTCGCGCCATTGCTGACAAATATAGCAAGGGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          ACTCTTGATTGTGCAAGAAGGTGGATATCACATCACATATTCAGCTTACTGTCTGCACGC
rJMSF042K13+          ACTCTTGATTGTGCAAGAAGGTGGATATCACATCACATATTCAGCTTACTGTCTGCACGC
                      ____________________________________________________________
consensus             ACTCTTGATTGTGCAAGAAGGTGGATATCACATCACATATTCAGCTTACTGTCTGCACGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          GGCTCTTGAAGGCGTGTTGAATGTATCTGCAGAACCTTTGTTACCTGACCCTATTGCGCA
rJMSF042K13+          GGCTCTTGAAGGCGTGTTGAATGTATCTGCAGAACCTTTGTTACCTGACCCTATTGCGCA
                      ____________________________________________________________
consensus             GGCTCTTGAAGGCGTGTTGAATGTATCTGCAGAACCTTTGTTACCTGACCCTATTGCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          TTATCCCGAGGATGAATCATTCTCCATCAAAGTTATCGAGGCGATCAGGAATTACCAGAA
rJMSF042K13+          TTATCCCGAGGATGAATCATTCTCCATCAAAGTTATCGAGGCGATCAGGAATTACCAGAA
                      ____________________________________________________________
consensus             TTATCCCGAGGATGAATCATTCTCCATCAAAGTTATCGAGGCGATCAGGAATTACCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          TGACACGGCGCCATTCTTGAAAGATGATGCTTAGTTATGAAGCTCTTGAAGAAGATATGG
rJMSF042K13+          TGACACGGCGCCATTCTTGAAAGATGATGCTTAGTTATGAAGCTCTTGAAGAAGATATGG
                      ____________________________________________________________
consensus             TGACACGGCGCCATTCTTGAAAGATGATGCTTAGTTATGAAGCTCTTGAAGAAGATATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          CACTGGTGTAGAAATCTGTTATGTAAATCCTACTTTGAGATGCATGCAGCATTCTCCTTC
rJMSF042K13+          CACTGGTGTAGAAATCTGTTATGTAAATCCTACTTTGAGATGCATGCAGCATTCTCCTTC
                      ____________________________________________________________
consensus             CACTGGTGTAGAAATCTGTTATGTAAATCCTACTTTGAGATGCATGCAGCATTCTCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          CTGAAATTGTAAGTTTTTTGGGGGGTGTGACGAGTGAAATTCATAGCCACTACTCGAAGG
rJMSF042K13+          CTGAAATTGTAAGTTTTTTGGGGGGTGTGACGAGTGAAATTCATAGCCACTACTCGAAGG
                      ____________________________________________________________
consensus             CTGAAATTGTAAGTTTTTTGGGGGGTGTGACGAGTGAAATTCATAGCCACTACTCGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          TGTGCACGGGGTAAACTCGCCTTTTGACCCTAGCCGGCAAAGAATCACTAGGAGGTAAAT
rJMSF042K13+          TGTGCACGGGGTAAACTCGCCTTTTGACCCTAGCCGGCAAAGAATCACTAGGAGGTAAAT
                      ____________________________________________________________
consensus             TGTGCACGGGGTAAACTCGCCTTTTGACCCTAGCCGGCAAAGAATCACTAGGAGGTAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          CATTTTAGGTTACTCATAATTGATCGGCTCAAACCAAGAAAGCCAATAAACTGTTCCCGC
rJMSF042K13+          CATTTTAGGTTACTCATAATTGATCGGCTCAAACCAAGAAAGCCAATAAACTGTTCCCGC
                      ____________________________________________________________
consensus             CATTTTAGGTTACTCATAATTGATCGGCTCAAACCAAGAAAGCCAATAAACTGTTCCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010F10+          TGAACTTGTAACCTTGTGGTTACTAAGTCAACAG                          
rJMSF042K13+          TGAACTTGTAACCTTGTGGTTACTAAGTCAACAGTTTTGTAACAACAGTTGCATGCTGCA
                      ____________________________________________________________
consensus             TGAACTTGTAACCTTGTGGTTACTAAGTCAACAGTTTTGTAACAACAGTTGCATGCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042K13+          TGCTTTAGACCGAAATATTTTAGGGATAAAATGGTAAATCTTAGCCCGGCATTCTTTTCA
                      ____________________________________________________________
consensus             TGCTTTAGACCGAAATATTTTAGGGATAAAATGGTAAATCTTAGCCCGGCATTCTTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042K13+          GTTATCACATTGATCCTCTCACGTATCAGTTATGTTGGGACTCACAATTAAAGTTAATCT
                      ____________________________________________________________
consensus             GTTATCACATTGATCCTCTCACGTATCAGTTATGTTGGGACTCACAATTAAAGTTAATCT