Contig 010062:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040F09Sequence673012118 (5)ref|XP_009590042.1|5e-54PREDICTED: neurofilament heavy polypeptide-like isoform X4 [Nicotiana tomentosi876010062 (2)ref|XP_011081489.1|4e-21PREDICTED: hepatoma-derived growth factor-related protein 2 [Sesamum indicum] r
JMSF042C01Sequence815010062 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+                                                         AAGGTCAGAGTTT
                      ____________________________________________________________
consensus                                                            AAGGTCAGAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          GGTGGCCAAACGATCAAGTATTTTATGAAGGTGTAATTCATTCCTTTGATCGTGTCACAA
                      ____________________________________________________________
consensus             GGTGGCCAAACGATCAAGTATTTTATGAAGGTGTAATTCATTCCTTTGATCGTGTCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          AGAAACACAAGGTTCTGTACCTTGACGGAGATGAAGAAATACTTAGGCTTAGTAAAGAAA
rJMSF042C01+                                  ACGGAGATGAAGAAATACTTAGGCTTAGTAAAGAAA
                      ____________________________________________________________
consensus             AGAAACACAAGGTTCTGTACCTTGACGGAGATGAAGAAATACTTAGGCTTAGTAAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          CACTGGAATTCATCAGTGATGCTTCTGCTGATATCAGGCAGAAGAAAAAAGCCAAAACAA
rJMSF042C01+          CACTGGAATTCATCAGTGATGCTTCTGCTGATATCAGGCAGAAGAAAAAAGCCAAAACAA
                      ____________________________________________________________
consensus             CACTGGAATTCATCAGTGATGCTTCTGCTGATATCAGGCAGAAGAAAAAAGCCAAAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          GTTCAGGAACATCATCTAAGAATGAAAAATCAGATATTACACCAAAGAGTGGCGGCAAGT
rJMSF042C01+          GTTCAGGAACATCATCTAAGAATGAAAAATCAGATATTACACCAAAGAGTGGCGGCAAGT
                      ____________________________________________________________
consensus             GTTCAGGAACATCATCTAAGAATGAAAAATCAGATATTACACCAAAGAGTGGCGGCAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          CGGGTTGTGCAACTTCAAAATCTGCTTGTAAGTCCAGCGGTGAAGTTAAAGTTGAGACCA
rJMSF042C01+          CGGGTTGTGCAACTTCAAAATCTGCTTGTAAGTCCAGCGGTGAAGTTAAAGTTGAGACCA
                      ____________________________________________________________
consensus             CGGGTTGTGCAACTTCAAAATCTGCTTGTAAGTCCAGCGGTGAAGTTAAAGTTGAGACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          AGTCCAAAGATCACCCCTTTAAATCAAGTGGTAAATCTAAGGATGTGAGTGGCGGTAAAT
rJMSF042C01+          AGTCCAAAGATCACCCCTTTAAATCAAGTGGTAAATCTAAGGATGTGAGTGGCGGTAAAT
                      ____________________________________________________________
consensus             AGTCCAAAGATCACCCCTTTAAATCAAGTGGTAAATCTAAGGATGTGAGTGGCGGTAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          CTAAGGATGCTATTTGCAACTTGCTCAAATTCAAGACAAAGCAGGATATCTCACCGAAGA
rJMSF042C01+          CTAAGGATGCTATTTGCAACTTGCTCAAATTCAAGACAAAGCAGGATATCTCACCGAAGA
                      ____________________________________________________________
consensus             CTAAGGATGCTATTTGCAACTTGCTCAAATTCAAGACAAAGCAGGATATCTCACCGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          CTACTGGCGAATCCAAGCAAGACAGTGCCAAAATTCCCCTCAAATCACAAGGTAAAAGCA
rJMSF042C01+          CTACTGGCGAATCCAAGCAAGACAGTGCCAAAATTCCCCTCAAATCACAAGGTAAAAGCA
                      ____________________________________________________________
consensus             CTACTGGCGAATCCAAGCAAGACAGTGCCAAAATTCCCCTCAAATCACAAGGTAAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          TCCAAAGTGGTATAAAGCCTAGTGGCAATACTACTGCCAAAACAAAATCCAGTGTGTCAA
rJMSF042C01+          TCCAAAGTGGTATAAAGCCTAGTGGCAATACTACTGCCAAAACAAAATCCAGTGTGTCAA
                      ____________________________________________________________
consensus             TCCAAAGTGGTATAAAGCCTAGTGGCAATACTACTGCCAAAACAAAATCCAGTGTGTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          GGGTGAAAGAAACAGGGGATGAAAAGGAAACCTCAAGTGAGACTGAAAAAACAACAGATG
rJMSF042C01+          GGGTGAAAGAAACAGGGGATGAAAAGGAAACCTCAAGTGAGACTGAAAAAACAACAGATG
                      ____________________________________________________________
consensus             GGGTGAAAGAAACAGGGGATGAAAAGGAAACCTCAAGTGAGACTGAAAAAACAACAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          CTACGAAGAGAAAAGCTTCAGATGCATCAAAGGAGCAAGAAACTGAAACAAAGAGTGGAA
rJMSF042C01+          CTACGAAGAGAAAAGCTTCAGATGCATCAAAGGAGCAAGAAACTGAAACAAAGAGTGGAA
                      ____________________________________________________________
consensus             CTACGAAGAGAAAAGCTTCAGATGCATCAAAGGAGCAAGAAACTGAAACAAAGAGTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          AGAAGCATAGAAAAAACTAATGCTGATGATTGTTGTACACTGTAATCTGCAATCAGAACT
rJMSF042C01+          AGAAGCATAGAAAAAACTAATGCTGATGATTGTTGTACACTGTAATCTGCAATCAGAACT
                      ____________________________________________________________
consensus             AGAAGCATAGAAAAAACTAATGCTGATGATTGTTGTACACTGTAATCTGCAATCAGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          CTTCAACCTGTTGGATAGCCTATCTAGTCTTTTAATTGAGGCTGAACCATTCGCGTTGAC
rJMSF042C01+          CTTCAACCTGTTGGATAGCCTATCTAGTCTTTTAATTGAGGCTGAACCATTCGCGTTGAC
                      ____________________________________________________________
consensus             CTTCAACCTGTTGGATAGCCTATCTAGTCTTTTAATTGAGGCTGAACCATTCGCGTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          TCCATGGTAGTTGCCTTCATTCTACCTGCTTGTTGCTTTTATTTCATATTTTCACCTAAC
rJMSF042C01+          TCCATGGTAGTTGCCTTCATTCTACCTGCTTGTTGCTTTTATTTCATATTTTCA-CTAAC
                      ____________________________________________________________
consensus             TCCATGGTAGTTGCCTTCATTCTACCTGCTTGTTGCTTTTATTTCATATTTTCACCTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040F09+          TTGGATGTCATGTGTTAT                                          
rJMSF042C01+          TTGGATGTCATGTGTTATTGAGTCCATATTAATTTGAACATTTGATGTTGGTGTAAGCCA
                      ____________________________________________________________
consensus             TTGGATGTCATGTGTTATTGAGTCCATATTAATTTGAACATTTGATGTTGGTGTAAGCCA