| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005B21 | Sequence | 429 | 010060 (9) | emb|CDP03765.1| | 1e-79 | unnamed protein product [Coffea canephora] | 571 | 010060 (9) | ref|XP_008235643.1| | 1e-82 | PREDICTED: 60S ribosomal protein L14-1 [Prunus mume] |
| JMFF014D11 | Sequence | 571 | 010060 (9) | ref|XP_008235643.1| | 9e-83 | PREDICTED: 60S ribosomal protein L14-1 [Prunus mume] | 571 | 010060 (9) | ref|XP_008235643.1| | 9e-83 | PREDICTED: 60S ribosomal protein L14-1 [Prunus mume] |
| JMFF040E16 | Sequence | 571 | 010060 (9) | ref|XP_008235643.1| | 9e-83 | PREDICTED: 60S ribosomal protein L14-1 [Prunus mume] | 601 | 010060 (9) | emb|CDP03765.1| | 1e-59 | unnamed protein product [Coffea canephora] |
| JMFN009K16 | Sequence | 588 | 010060 (9) | ref|XP_008235643.1| | 1e-82 | PREDICTED: 60S ribosomal protein L14-1 [Prunus mume] | |||||
| JMFN044F21 | Sequence | 576 | 010060 (9) | ref|XP_008235643.1| | 2e-82 | PREDICTED: 60S ribosomal protein L14-1 [Prunus mume] | |||||
| JMSF041L21 | Sequence | 561 | 010060 (9) | ref|XP_004953139.1| | 9e-57 | PREDICTED: 60S ribosomal protein L14-1-like isoform X2 [Setaria italica] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF040E16+ GTAATGAAAAAGGCGAAGTCTTTGCTTTAGGGACAAAA
JMFF014D11+ GTAATGAAAAAGGCGAAGTCTTTGCTTTAGGGACAAAA
rJMFF005B21- GTAATGAAAAAGGCGAAGTCTTTGCTTTAGGGACAAAA
rJMFF014D11- GTAATGAAAAAGGCGAAGTCTTTGCTTTAGGGACAAAA
rJMSF041L21- AGTCTTTGCTTTAGGGACAAAA
____________________________________________________________
consensus GTAATGAAAAAGGCGAAGTCTTTGCTTTAGGGACAAAA
. : . : . : . : . : . :
JMFF040E16+ ATTAAAATTTCCAAATAAACAACACAAACTCAAAGCTTAGTGTAGCTAAGATCTCTCTCT
JMFF014D11+ ATTAAAATTTCCAAATAAACAACACAAACTCAAAGCTTAGTGTAGCTAAGATCTCTCTCT
rJMFF005B21- ATTAAAATTTCCAAATAAACAACACAAACTCAAAGCTTAGTGTAGCTAAGATCTCTCTCT
rJMFF014D11- ATTAAAATTTCCAAATAAACAACACAAACTCAAAGCTTAGTGTAGCTAAGATCTCTCTCT
rJMSF041L21- ATTAAAATTTCCAAATAAACAACACAAACTCAAAGCTTAGTGTAGCTAAGATCTCTCTCT
____________________________________________________________
consensus ATTAAAATTTCCAAATAAACAACACAAACTCAAAGCTTAGTGTAGCTAAGATCTCTCTCT
. : . : . : . : . : . :
JMFF040E16+ ATCAAAAGTCTGGGTTATCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
JMFF014D11+ ATCAAAAGTCTGGGTTATCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
rJMFF005B21- ATCAAAAGTCTGGGTTATCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
JMFN009K16+ TCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
JMFN044F21+ TCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
rJMFF040E16- TCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
JMFF005B21+ GGCAAGCTCCTGTCTC
rJMFF014D11- ATCAAAAGTCTGGGTTATCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
rJMSF041L21- ATCAAAAGTCTGGGTTATCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
____________________________________________________________
consensus ATCAAAAGTCTGGGTTATCAGGCAGTGCTCTCCTTCTTAAGCTTGGCAAGCTCCTGTCTC
. : . : . : . : . : . :
JMFF040E16+ ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
JMFF014D11+ ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
rJMFF005B21- ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
JMFN009K16+ ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
JMFN044F21+ ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
rJMFF040E16- ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
JMFF005B21+ ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
rJMFF014D11- ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
rJMSF041L21- ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
____________________________________________________________
consensus ACAACTCCAGCTTTCTTGATTTTTGCCAGCATAATCTTAAACCTGTCAAAGTCATTGAGG
. : . : . : . : . : . :
JMFF040E16+ CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
JMFF014D11+ CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
rJMFF005B21- CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
JMFN009K16+ CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
JMFN044F21+ CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
rJMFF040E16- CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
JMFF005B21+ CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
rJMFF014D11- CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
rJMSF041L21- CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
____________________________________________________________
consensus CCAGCCCTCCTCTTTTGCACGATCAACTTCCTCCCCCATGAGCTGTTCTCCCACTTGCTC
. : . : . : . : . : . :
JMFF040E16+ TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
JMFF014D11+ TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
rJMFF005B21- TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
JMFN009K16+ TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
JMFN044F21+ TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
rJMFF040E16- TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
JMFF005B21+ TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
rJMFF014D11- TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
rJMSF041L21- TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTCTTTTTTTGGCACTCTTTTAAT
____________________________________________________________
consensus TTCACATCAGCAGCCTCCATAGCAGCGATCAAAGTCTTC-TTTTTCGGCACTCTTTTAAT
. : . : . : . : . : . :
JMFF040E16+ GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
JMFF014D11+ GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
rJMFF005B21- GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
JMFN009K16+ GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
JMFN044F21+ GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
rJMFF040E16- GTCAATGGTGATGTCTAGTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
JMFF005B21+ GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
rJMFF014D11- GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
rJMSF041L21- GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
____________________________________________________________
consensus GTCAATGGTGATGTCT-GTGAGTGTAAGCCTCTTAAAGTTCATTTGGCTCCTAACCATGT
. : . : . : . : . : . :
JMFF040E16+ CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
JMFF014D11+ CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
rJMFF005B21- CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
JMFN009K16+ CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
JMFN044F21+ CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
rJMFF040E16- CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
JMFF005B21+ CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
rJMFF014D11- CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
rJMSF041L21- CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
____________________________________________________________
consensus CTGGAGCATCAACAAGGGCCCTGTTCTGATCGATAACATCGACAATGACGACAAGCTTGC
. : . : . : . : . : . :
JMFF040E16+ CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
JMFF014D11+ CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
rJMFF005B21- CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
JMFN009K16+ CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
JMFN044F21+ CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
rJMFF040E16- CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
JMFF005B21+ CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
rJMFF014D11- CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
rJMSF041L21- CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
____________________________________________________________
consensus CATAGTCCTTTCCGTAGTTGACAAGGGCAACCCTCCCGATCTCCACGTACCTCTTGAACG
. : . : . : . : . : . :
JMFF040E16+ GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGAGGCC
JMFF014D11+ GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGAGGCC
rJMFF005B21- GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGA
JMFN009K16+ GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAG
JMFN044F21+ GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTT
rJMFF040E16- GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGAGGCC
JMFF005B21+ GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGA
rJMFF014D11- GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGAGGCC
rJMSF041L21- GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGAGGCCGAAGC
____________________________________________________________
consensus GCATTTTTGGCAATCCGAATGAGCAGAACGGGGCGATGCAGGTTGAGCTGAGGCCGAAGC