clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF004L18 | Sequence | 388 | 010803 (5) | ref|XP_009783617.1| | 4e-36 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris] | 155 | 010055 (3) | emb|CDP01562.1| | 1e-15 | unnamed protein product [Coffea canephora] |
JMSF035E21 | Sequence | 669 | 010803 (5) | ref|XP_009783617.1| | 8e-93 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris] | 665 | 010055 (3) | ref|XP_006353172.1| | 8e-113 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Solanum tuberosum |
JMSF040H04 | Sequence | 648 | 010803 (5) | ref|XP_009783617.1| | 7e-98 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris] | 863 | 010055 (3) | ref|XP_009783617.1| | 7e-149 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF040H04+ TCCTAGTAATGTTGATGAGCTTG
____________________________________________________________
consensus TCCTAGTAATGTTGATGAGCTTG
. : . : . : . : . : . :
rJMSF040H04+ GTGCTAACTACCTTGGAGAGAAGGATAAAGAGAACAAAGGAGCGGGGAAGTTTGTAGCCA
____________________________________________________________
consensus GTGCTAACTACCTTGGAGAGAAGGATAAAGAGAACAAAGGAGCGGGGAAGTTTGTAGCCA
. : . : . : . : . : . :
rJMSF040H04+ TTCACCTACGCTTTGATAAGGACATGGCTGCTCATTCAGCTTGTGATTTTGGTGGAGGTA
____________________________________________________________
consensus TTCACCTACGCTTTGATAAGGACATGGCTGCTCATTCAGCTTGTGATTTTGGTGGAGGTA
. : . : . : . : . : . :
rJMSF035E21+ GTCCTAA
rJMSF040H04+ AGGCTGAGAAGTTATCTCTAGCTAAGTATCGGCAGAGGATTTGGCAGGGAAGGGTCCTAA
____________________________________________________________
consensus AGGCTGAGAAGTTATCTCTAGCTAAGTATCGGCAGAGGATTTGGCAGGGAAGGGTCCTAA
. : . : . : . : . : . :
rJMSF035E21+ ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
rJMSF040H04+ ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
____________________________________________________________
consensus ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
. : . : . : . : . : . :
rJMSF035E21+ AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
rJMSF040H04+ AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
____________________________________________________________
consensus AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
. : . : . : . : . : . :
rJMSF035E21+ CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
rJMSF040H04+ CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
____________________________________________________________
consensus CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
. : . : . : . : . : . :
rJMSF035E21+ TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
rJMSF040H04+ TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
____________________________________________________________
consensus TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
. : . : . : . : . : . :
rJMSF035E21+ CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
rJMSF040H04+ CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
____________________________________________________________
consensus CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
. : . : . : . : . : . :
rJMSF004L18+ CATAGAACTTAGTATAATTCAAAGNCGA
rJMSF035E21+ CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
rJMSF040H04+ CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
____________________________________________________________
consensus CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
. : . : . : . : . : . :
rJMSF004L18+ TAAGGCCCAACATGCANCTGGTAGGTCANCTNTTCNTAAACAAAAACCTGGGCTGGCCGG
rJMSF035E21+ TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
rJMSF040H04+ TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
____________________________________________________________
consensus TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
. : . : . : . : . : . :
rJMSF004L18+ AGTTCAAAGAGGCGGNGGTTGAAGGGCATNCAAACCGACAAGGGCNGATCAGACTTCGCA
rJMSF035E21+ AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
rJMSF040H04+ AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
____________________________________________________________
consensus AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
. : . : . : . : . : . :
rJMSF004L18+ AA
rJMSF035E21+ AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
rJMSF040H04+ AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
____________________________________________________________
consensus AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
. : . : . : . : . : . :
rJMSF035E21+ ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
rJMSF040H04+ ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
____________________________________________________________
consensus ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
. : . : . : . : . : . :
rJMSF035E21+ GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACC
rJMSF040H04+ GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACCAC
____________________________________________________________
consensus GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACCAC