Contig 010055:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004L18Sequence388010803 (5)ref|XP_009783617.1|4e-36PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]155010055 (3)emb|CDP01562.1|1e-15unnamed protein product [Coffea canephora]
JMSF035E21Sequence669010803 (5)ref|XP_009783617.1|8e-93PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]665010055 (3)ref|XP_006353172.1|8e-113PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Solanum tuberosum
JMSF040H04Sequence648010803 (5)ref|XP_009783617.1|7e-98PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]863010055 (3)ref|XP_009783617.1|7e-149PREDICTED: uncharacterized protein At1g04910-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040H04+ TCCTAGTAATGTTGATGAGCTTG
                      ____________________________________________________________
consensus TCCTAGTAATGTTGATGAGCTTG
 
. : . : . : . : . : . :
rJMSF040H04+ GTGCTAACTACCTTGGAGAGAAGGATAAAGAGAACAAAGGAGCGGGGAAGTTTGTAGCCA
                      ____________________________________________________________
consensus GTGCTAACTACCTTGGAGAGAAGGATAAAGAGAACAAAGGAGCGGGGAAGTTTGTAGCCA
 
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rJMSF040H04+ TTCACCTACGCTTTGATAAGGACATGGCTGCTCATTCAGCTTGTGATTTTGGTGGAGGTA
                      ____________________________________________________________
consensus TTCACCTACGCTTTGATAAGGACATGGCTGCTCATTCAGCTTGTGATTTTGGTGGAGGTA
 
. : . : . : . : . : . :
rJMSF035E21+ GTCCTAA
rJMSF040H04+ AGGCTGAGAAGTTATCTCTAGCTAAGTATCGGCAGAGGATTTGGCAGGGAAGGGTCCTAA
                      ____________________________________________________________
consensus AGGCTGAGAAGTTATCTCTAGCTAAGTATCGGCAGAGGATTTGGCAGGGAAGGGTCCTAA
 
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rJMSF035E21+ ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
rJMSF040H04+ ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
                      ____________________________________________________________
consensus ACTCTCAATTTACTGATGAGGAGTTGAGGAGTCAGGGCCGCTGTCCATTGACCCCAGAAG
 
. : . : . : . : . : . :
rJMSF035E21+ AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
rJMSF040H04+ AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
                      ____________________________________________________________
consensus AAGTTGGATTGTTGCTAGCTGCTTTGGGATTTGACAACAATACTCGATTATATCTTGCCT
 
. : . : . : . : . : . :
rJMSF035E21+ CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
rJMSF040H04+ CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
                      ____________________________________________________________
consensus CCCATAAGGTTTATGGTGGGGAAGCCAGGATTTCACCATTAAGAAGTTTGTTTCCATTGA
 
. : . : . : . : . : . :
rJMSF035E21+ TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
rJMSF040H04+ TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
                      ____________________________________________________________
consensus TGGAGGACAAGAAGAGCCTTGCCACTTCGGAGGAAAGAGCCCTTATAAAAGGAAAGGCTT
 
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rJMSF035E21+ CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
rJMSF040H04+ CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
                      ____________________________________________________________
consensus CCTTGCTTGCTGCAGTAGATTACTATGTTGGCATGCATAGTGATATTTTCATTTCGGCAT
 
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rJMSF004L18+ CATAGAACTTAGTATAATTCAAAGNCGA
rJMSF035E21+ CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
rJMSF040H04+ CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
                      ____________________________________________________________
consensus CACCCGGAAATATGCATAATGCAATGGCGGGACATAGAACTTACTATAATTCAAAGACGA
 
. : . : . : . : . : . :
rJMSF004L18+ TAAGGCCCAACATGCANCTGGTAGGTCANCTNTTCNTAAACAAAAACCTGGGCTGGCCGG
rJMSF035E21+ TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
rJMSF040H04+ TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
                      ____________________________________________________________
consensus TAAGGCCCAACATGCAACTGCTAGGTCAGCTTTTCCTAAACAAAAACCTGGGCTGGCCGG
 
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rJMSF004L18+ AGTTCAAAGAGGCGGNGGTTGAAGGGCATNCAAACCGACAAGGGCNGATCAGACTTCGCA
rJMSF035E21+ AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
rJMSF040H04+ AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
                      ____________________________________________________________
consensus AGTTCAAAGAGGCGGTGGTTGAAGGGCATACAAACCGACAAGGGCAGATCAGACTTCGCA
 
. : . : . : . : . : . :
rJMSF004L18+ AA
rJMSF035E21+ AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
rJMSF040H04+ AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
                      ____________________________________________________________
consensus AACCAGGTCAATCTCTATATACGTACCCTGCTCCCAATTGCATGTGCGAGGCTTGAAGTT
 
. : . : . : . : . : . :
rJMSF035E21+ ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
rJMSF040H04+ ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
                      ____________________________________________________________
consensus ACTTTCACCAATGGATGTGTGGTTTTGGCCGTATAGATGTTCTATTATTTATTACTCCTT
 
. : . : . : . : . : . :
rJMSF035E21+ GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACC
rJMSF040H04+ GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACCAC
                      ____________________________________________________________
consensus GTTATTCGTGGCCGAAGCATTTTATTTTTGCCGTGTAATAGTCAGAGAATAAAACACCAC