| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF020O24 | Sequence | 636 | 002206 (2) | emb|CDP10671.1| | 8e-09 | unnamed protein product [Coffea canephora] | 735 | 010047 (3) | ref|XP_009618655.1| | 9e-27 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to |
| JMSF038N20 | Sequence | 637 | 002206 (2) | emb|CDP10671.1| | 8e-09 | unnamed protein product [Coffea canephora] | 854 | 010047 (3) | ref|XP_009618655.1| | 4e-32 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to |
| JMSF039G20 | Sequence | 646 | 014728 | emb|CDP10671.1| | 6e-14 | unnamed protein product [Coffea canephora] | 801 | 010047 (3) | gb|AEW48216.1| | 2e-15 | disease resistance protein RX3 [Solanum leptophyes x Solanum sparsipilum] |
This contig is upended
. : . : . : . : . : . :
rJMSF038N20+ GGACGTATTGTTTCATTAGGAAA
____________________________________________________________
consensus GGACGTATTGTTTCATTAGGAAA
. : . : . : . : . : . :
rJMSF038N20+ CTTTGTCAGTTGTTCATAGAAACTTAGAGAATGTATCTTGGTTGGATTCTAAGCTTTGTA
____________________________________________________________
consensus CTTTGTCAGTTGTTCATAGAAACTTAGAGAATGTATCTTGGTTGGATTCTAAGCTTTGTA
. : . : . : . : . : . :
rJMSF020O24+ AAAAATTGGGGATTGATTGTGGANTCC
rJMSF038N20+ CAAAGGATCTGTTTATAATGATTCCAAATTTAAAAAAATTGGGGATTGATTGTGGATTCC
____________________________________________________________
consensus CAAAGGATCTGTTTATAATGATTCCAAATTTAAAAAAATTGGGGATTGATTGTGGATTCC
. : . : . : . : . : . :
rJMSF020O24+ ATGAAGACNATCTAGATTATTTTTATAATTTTGTGCACTTGAGGCAGCTTGAGAAGTTAA
rJMSF038N20+ ATGAAGACAATCTAGATTATTTTTATAATTTTGTGCACTTGAGGCAGCTTGAGAAGTTAA
____________________________________________________________
consensus ATGAAGACAATCTAGATTATTTTTATAATTTTGTGCACTTGAGGCAGCTTGAGAAGTTAA
. : . : . : . : . : . :
rJMSF020O24+ GCATCAAAAGGTGGACAATCAAATATATTCCATCTATCGGCTTCTCATGGGAATCTAGTT
rJMSF038N20+ GCATCAAAAGGTGGACAATCAAATATATTCCATCTATCGGCTTCTCATGGGAATCTAGTT
____________________________________________________________
consensus GCATCAAAAGGTGGACAATCAAATATATTCCATCTATCGGCTTCTCATGGGAATCTAGTT
. : . : . : . : . : . :
rJMSF020O24+ TTTTACCAAATCTTAAGAAGCTCAAATTCTTCTGGACAAAATTTGCATGGGGTGATATGA
rJMSF038N20+ TTTTACCAAATCTTAAGAAGCTCAAATTCTTCTGGACAAAATTTGCATGGGGTGATATGA
____________________________________________________________
consensus TTTTACCAAATCTTAAGAAGCTCAAATTCTTCTGGACAAAATTTGCATGGGGTGATATGA
. : . : . : . : . : . :
rJMSF020O24+ GGCTTATTGGCATGTTGCCAAATCTAGAGGTTCTAAAACTAATACATGCTATTGATAGCA
rJMSF038N20+ GGCTTATTGGCATGTTGCCAAATCTAGAGGTTCTAAAACTAATACATGCTATTGATAGCA
rJMSF039G20+ TGCTATTGCTAGCA
____________________________________________________________
consensus GGCTTATTGGCATGTTGCCAAATCTAGAGGTTCTAAAACTAATACATGCTATTGATAGCA
. : . : . : . : . : . :
rJMSF020O24+ AATACAGAATCTGGGAGCCATCCAAGGAAGGGCTCCGTCAATTGAAAAGATTGGTAATT-
rJMSF038N20+ AATACAGAATCTGGGAGCCATCCAAGGAAGGGCTCCGTCAATTGAAAAGATTGGTAATT-
rJMSF039G20+ AACACAGAATGTGGGAGCCATCCGAGGAAGGATTCCCTCAATTGAAAAGATTGGTAATTG
____________________________________________________________
consensus AATACAGAATCTGGGAGCCATCCAAGGAAGGGCTCCGTCAATTGAAAAGATTGGTAATT-
. : . : . : . : . : . :
rJMSF020O24+ GAAGATACATTTTTGCAACGTTGGAGTGCCGTGGGTGAACATTTCCCTTTGCTAGAATGT
rJMSF038N20+ GAAGATACATTTTTGCAACGTTGGAGTGCCGTGGGTGAACATTTCCCTTTGCTAGAATGT
rJMSF039G20+ GAAGATACATTTTTGGAACGTTGGAATGCCATGGGTGACCATTTCCCTCTGCTAGAATGT
____________________________________________________________
consensus GAAGATACATTTTTGCAACGTTGGAGTGCCGTGGGTGAACATTTCCCTTTGCTAGAATGT
. : . : . : . : . : . :
rJMSF020O24+ TTAGAGATACGTGAATGCAAGTATTTGCGAGAGATCCCTAGTGGTTTTGCGGATATCACC
rJMSF038N20+ TTAGAGATACGTGAATGCAAGTATTTGCGAGAGATCCCTAGTGGTTTTGCGGATATCACC
rJMSF039G20+ TTAGAGTTACGTGAATGCAAGCATTTGCAAGAAATCCCTAGTGGTTTTGCCGATATCACC
____________________________________________________________
consensus TTAGAGATACGTGAATGCAAGTATTTGCGAGAGATCCCTAGTGGTTTTGCGGATATCACC
. : . : . : . : . : . :
rJMSF020O24+ ACACTAGCACTAATTCAGTTAAACTGGTTTTGGGATTCCGTTCTGACTTCCGCAAAGTTG
rJMSF038N20+ ACACTAGCACTAATTCAGTTAAACTGGTTTTGGGATTCCGTTCTGACTTCCGCAAAGTTG
rJMSF039G20+ ACACTAGCACTGATTCAGTTAAACCGCTGTTGGGATTCTGTTCTGGTTTCTGCAAAGTTG
____________________________________________________________
consensus ACACTAGCACTAATTCAGTTAAACTGGTTTTGGGATTCCGTTCTGACTTCCGCAAAGTTG
. : . : . : . : . : . :
rJMSF020O24+ ATTCAAGAAGAGCAATACAACAACTATGGAAATGCCCTCCTTGTTCGTTC
rJMSF038N20+ ATTCAAGAAGAGCAATACAACAACTATGGAAATGCCCTCCTTGTTCGTTC
rJMSF039G20+ ATTCAAGAAAAGCAATACAACAACTATGGAAATGCCCTCCTTGTTCGTTCGGAAAGTATT
____________________________________________________________
consensus ATTCAAGAAGAGCAATACAACAACTATGGAAATGCCCTCCTTGTTCGTTCGGAAAGTATT
. : . : . : . : . : . :
rJMSF039G20+ ATGGTCTCTTTCTATCCCTCAGCTCTAATATATATATTATAATGCGTTACCATTTAACAT
____________________________________________________________
consensus ATGGTCTCTTTCTATCCCTCAGCTCTAATATATATATTATAATGCGTTACCATTTAACAT
. : . : . : . : . : . :
rJMSF039G20+ ATATGCACTTACTTCATGCATGCTACTTGAATTCTTCATGGCCATTATATCTGATCTGAT
____________________________________________________________
consensus ATATGCACTTACTTCATGCATGCTACTTGAATTCTTCATGGCCATTATATCTGATCTGAT
. : . : . : . : . : . :
rJMSF039G20+ CTGTTTCCTCCCATCACTTCTATCTCATATTTCCTTACCTATCTAACTGCTGTGTGTTCA
____________________________________________________________
consensus CTGTTTCCTCCCATCACTTCTATCTCATATTTCCTTACCTATCTAACTGCTGTGTGTTCA
. : . : . : . : . : . :
rJMSF039G20+ CCTTTTCATTTTTACTTAATTTATCGATTGCAGACGGAACGTGCAAACAACAAATAGGAA
____________________________________________________________
consensus CCTTTTCATTTTTACTTAATTTATCGATTGCAGACGGAACGTGCAAACAACAAATAGGAA
. : . : . : . : . : . :
rJMSF039G20+ GAATGGGATATGGAGGAAGAGAGTGATCTTTAGCAGTATTTGGCAGATCGAATATTCTGT
____________________________________________________________
consensus GAATGGGATATGGAGGAAGAGAGTGATCTTTAGCAGTATTTGGCAGATCGAATATTCTGT
. : . : . : . : . : . :
rJMSF039G20+ TGCAAATCATAGTATTATATATTTTAGTAAACTGCAATGGTTTCTGCTTGTCAGAAGAAG
____________________________________________________________
consensus TGCAAATCATAGTATTATATATTTTAGTAAACTGCAATGGTTTCTGCTTGTCAGAAGAAG
. : . : . : . : . : . :
rJMSF039G20+ TTGCTGATGGAAAGAGCTTAGTAAACTGCTGCTTTTTATTATTTTAGTTTTCGACTGTGT
____________________________________________________________
consensus TTGCTGATGGAAAGAGCTTAGTAAACTGCTGCTTTTTATTATTTTAGTTTTCGACTGTGT
. : . : . : . : . : . :
rJMSF039G20+ TTGCAGAAAGAGCTTAGGATCTTCTGAAAGTTGTTTGGTCTTGCTTTTTTAAAGAGTATT
____________________________________________________________
consensus TTGCAGAAAGAGCTTAGGATCTTCTGAAAGTTGTTTGGTCTTGCTTTTTTAAAGAGTATT