| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF026O05 | Sequence | 688 | 011772 (5) | ref|XP_009781599.1| | 9e-86 | PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Nicotiana sylvestris] | 689 | 010046 (3) | ref|XP_009781599.1| | 4e-96 | PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Nicotiana sylvestris] |
| JMSF037M20 | Sequence | 624 | 011772 (5) | ref|XP_009781597.1| | 2e-78 | PREDICTED: poly [ADP-ribose] polymerase 1 isoform X1 [Nicotiana sylvestris] | 652 | 010046 (3) | ref|XP_009781597.1| | 4e-101 | PREDICTED: poly [ADP-ribose] polymerase 1 isoform X1 [Nicotiana sylvestris] |
| JMSF039E03 | Sequence | 674 | 011772 (5) | ref|XP_009781599.1| | 5e-83 | PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Nicotiana sylvestris] | 824 | 010046 (3) | ref|XP_009781597.1| | 7e-124 | PREDICTED: poly [ADP-ribose] polymerase 1 isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF039E03+ TACTCGTGACTCTGAAGATTTCCGGCTGGTTGAGAAGTATCTCC
____________________________________________________________
consensus TACTCGTGACTCTGAAGATTTCCGGCTGGTTGAGAAGTATCTCC
. : . : . : . : . : . :
rJMSF039E03+ AAGCTACTCATGCTCCCACACATAAGGAATGGGCTCTTGAAGTGGAACAAGTGTTTTCTC
____________________________________________________________
consensus AAGCTACTCATGCTCCCACACATAAGGAATGGGCTCTTGAAGTGGAACAAGTGTTTTCTC
. : . : . : . : . : . :
rJMSF026O05+ CTCCCTTCAGAAAGAAATTGAAGAATAGAA
rJMSF037M20+ AAAGGGGAACTTGACAAATTTGCTCCCTTCAGAAAGAAATTGAAGAATAGAA
rJMSF039E03+ TTGAACGCAAAGGGGAACTTGACAAATTTGCTCCCTTCAGAAAGAAATTGAAGAATAGAA
____________________________________________________________
consensus TTGAACGCAAAGGGGAACTTGACAAATTTGCTCCCTTCAGAAAGAAATTGAAGAATAGAA
. : . : . : . : . : . :
rJMSF026O05+ TGCTTTTATGGCACGGTTCACGGTTGACGAACTTTGTTGGTATACTTAGCCAAGGACTAA
rJMSF037M20+ TGCTTTTATGGCACGGTTCACGGTTGACGAACTTTGTTGGTATACTTAGCCAAGGACTAA
rJMSF039E03+ TGCTTTTATGGCACGGTTCACGGTTGACGAACTTTGTTGGTATACTTAGCCAAGGACTAA
____________________________________________________________
consensus TGCTTTTATGGCACGGTTCACGGTTGACGAACTTTGTTGGTATACTTAGCCAAGGACTAA
. : . : . : . : . : . :
rJMSF026O05+ GGATTGCTCCTCCTGAAGCCCCAACTACTGGCTATATGTTTGGCAAAGGAGTTTACTTTG
rJMSF037M20+ GGATTGCTCCTCCTGAAGCCCCAACTACTGGCTATATGTTTGGCAAAGGAGTTTACTTTG
rJMSF039E03+ GGATTGCTCCTCCTGAAGCCCCAACTACTGGCTATATGTTTGGCAAAGGAGTTTACTTTG
____________________________________________________________
consensus GGATTGCTCCTCCTGAAGCCCCAACTACTGGCTATATGTTTGGCAAAGGAGTTTACTTTG
. : . : . : . : . : . :
rJMSF026O05+ CTGACATGGTCAGTAAGAGTGCTCAGTATTGTTTTACAAACCGTAAAAATCCTGTGGGCT
rJMSF037M20+ CTGACATGGTCAGTAAGAGTGCTCAGTATTGTTTTACAAACCGTAAAAATCCTGTGGGCT
rJMSF039E03+ CTGACATGGTCAGTAAGAGTGCTCAGTATTGTTTTACAAACCGTAAAAATCCTGTGGGCT
____________________________________________________________
consensus CTGACATGGTCAGTAAGAGTGCTCAGTATTGTTTTACAAACCGTAAAAATCCTGTGGGCT
. : . : . : . : . : . :
rJMSF026O05+ TTATGCTACTCAGTGAAGTTGCATTGGGAGACATGCACGAGCTTAAAAAGGCTCAGTACA
rJMSF037M20+ TTATGCTACTCAGTGAAGTTGCATTGGGAGACATGCACGAGCTTAAAAAGGCTCAGTACA
rJMSF039E03+ TTATGCTACTCAGTGAAGTTGCATTGGGAGACATGCACGAGCTTAAAAAGGCTCAGTACA
____________________________________________________________
consensus TTATGCTACTCAGTGAAGTTGCATTGGGAGACATGCACGAGCTTAAAAAGGCTCAGTACA
. : . : . : . : . : . :
rJMSF026O05+ TGGACAAGCCCCCGAAAGGGAAGCACTCTACTAAAGGTCTGGGTAAGACAGTACCTCAAG
rJMSF037M20+ TGGACAAGCCCCCGAAAGGGAAGCACTCTACTAAAGGTCTGGGTAAGACAGTACCTCAAG
rJMSF039E03+ TGGACAAGCCCCCGAAAGGGAAGCACTCTACTAAAGGTCTGGGTAAGACAGTACCTCAAG
____________________________________________________________
consensus TGGACAAGCCCCCGAAAGGGAAGCACTCTACTAAAGGTCTGGGTAAGACAGTACCTCAAG
. : . : . : . : . : . :
rJMSF026O05+ AATCAGACTATGTGAAGTGGCGGGATGAAGTAGTTGTACCTTGTGGAAAACCAGTGCCAT
rJMSF037M20+ AATCAGACTATGTGAAGTGGCGGGATGAAGTAGTTGTACCTTGTGGAAAACCAGTGCCAT
rJMSF039E03+ AATCAGACTATGTGAAGTGGCGGGATGAAGTAGTTGTACCTTGTGGAAAACCAGTGCCAT
____________________________________________________________
consensus AATCAGACTATGTGAAGTGGCGGGATGAAGTAGTTGTACCTTGTGGAAAACCAGTGCCAT
. : . : . : . : . : . :
rJMSF026O05+ CAAAAGTCAAGGCATCGGAGCTTTTATATAATGAATATATTGTTTACGACATTGCCCAGG
rJMSF037M20+ CAAAAGTCAAGGCATCGGAGCTTTTATATAATGAATATATTGTTTACGACATTGCCCAGG
rJMSF039E03+ CAAAAGTCAAGGCATCGGAGCTTTTATATAATGAATATATTGTTTACGACATTGCCCAGG
____________________________________________________________
consensus CAAAAGTCAAGGCATCGGAGCTTTTATATAATGAATATATTGTTTACGACATTGCCCAGG
. : . : . : . : . : . :
rJMSF026O05+ TCAAGCTGCAGTTCTTAGTGAAGGTGAGGTTTCAGTACAAGTGATGAACCAAAATTCTGC
rJMSF037M20+ TCAAGCTGCAGTTCTTAGTGAAGGTGAGGTTTCAGTACAAGTGATGAACCAAAATTCTGC
rJMSF039E03+ TCAAGCTGCAGTTCTTAGTGAAGGTGAGGTTTCAGTACAAGTGATGAACCAAAATTCTGC
____________________________________________________________
consensus TCAAGCTGCAGTTCTTAGTGAAGGTGAGGTTTCAGTACAAGTGATGAACCAAAATTCTGC
. : . : . : . : . : . :
rJMSF026O05+ ATTATTAATGTTTCTTGGAGCTGTATATAATGGTGGAACCTATGTTGGATATTCTGCTCC
rJMSF037M20+ ATTATTAATGTTTCTTGGAGCTGTATATAATGGTGGAACCTATGTTGGATATTCTGCTCC
rJMSF039E03+ ATTATTAATGTTTCTTGGAGCTGTATATAATGGTGGAACCTATGTTGGATATTCTGCTCC
____________________________________________________________
consensus ATTATTAATGTTTCTTGGAGCTGTATATAATGGTGGAACCTATGTTGGATATTCTGCTCC
. : . : . : . : . : . :
rJMSF026O05+ TTAGTACTCTACCTTTTGAAATTGCCTGGCTGTTTGGCGCCGAATCGGTCAGATCTCATT
rJMSF037M20+ TTAGTACTCTACCTTTTGAAATTGCCTGGCTGTTTGGCGCCGAATCGGTCAGATCTCATT
rJMSF039E03+ TTAGTACTCTACCTTTTGAAATTGCCTGGCTGTTTGGCGCCGAATCGGTCAGATCTCATT
____________________________________________________________
consensus TTAGTACTCTACCTTTTGAAATTGCCTGGCTGTTTGGCGCCGAATCGGTCAGATCTCATT
. : . : . : . : . : . :
rJMSF026O05+ TTGAGACTTCCTGGAGATCTGAGTTCTTCAATGAATGTGTAAATGGCTTTTGTATGATA
rJMSF039E03+ TTGAGACTTCCTGGAGATCTGAGTTCTTCAATGAATGTGTAAATGGCTTTTGTATGATAT
____________________________________________________________
consensus TTGAGACTTCCTGGAGATCTGAGTTCTTCAATGAATGTGTAAATGGCTTTTGTATGATAT