Contig 010043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011J11Sequence554008754 (4)ref|XP_009606718.1|5e-14PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Nic698010043 (2)emb|CDP15250.1|6e-96unnamed protein product [Coffea canephora]
JMSF038F11Sequence510008754 (4)ref|XP_009606718.1|6e-17PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Nic906010043 (2)emb|CDP15250.1|3e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038F11+ CCGAGG
                      ____________________________________________________________
consensus CCGAGG
 
. : . : . : . : . : . :
rJMSF038F11+ TGGATAAGTTGNTGTTAGAAATGGAAGAGAAGGGCGTCCCGAGAGACGTGGAGACCTTCA
                      ____________________________________________________________
consensus TGGATAAGTTGNTGTTAGAAATGGAAGAGAAGGGCGTCCCGAGAGACGTGGAGACCTTCA
 
. : . : . : . : . : . :
rJMFF011J11+ TTGTGTAAGATTAGACAAACTCAGACCGCGATTGACTTATTCT
rJMSF038F11+ ANGTGTTGGTTTCTAATTTGTGTAAGATTAGACAAACTCAGACCGCGATTGACTTATTCT
                      ____________________________________________________________
consensus ANGTGTTGGTTTCTAATTTGTGTAAGATTAGACAAACTCAGACCGCGATTGACTTATTCT
 
. : . : . : . : . : . :
rJMFF011J11+ ATCGGATGGGGGAATGGGGATGTCATCCCAACGAGACAACGTTTCTCACGCTTATTAGGA
rJMSF038F11+ ATCGGATGGGGGAATGGGGATGTCATCCCAACGAGACAACGTTTCTCACGCTTATTAGGA
                      ____________________________________________________________
consensus ATCGGATGGGGGAATGGGGATGTCATCCCAACGAGACAACGTTTCTCACGCTTATTAGGA
 
. : . : . : . : . : . :
rJMFF011J11+ GTTTGTATCAGGCCGCGAGAGTTGGAGAGGGCGACGAAATGATTGATAGGATGAAGTCTG
rJMSF038F11+ GTTTGTATCAGGCCGCGAGAGTTGGAGAGGGCGACGAAATGATTGATAGGATGAAGTCTG
                      ____________________________________________________________
consensus GTTTGTATCAGGCCGCGAGAGTTGGAGAGGGCGACGAAATGATTGATAGGATGAAGTCTG
 
. : . : . : . : . : . :
rJMFF011J11+ CGGGATATGGAGATGCGCTCGATAAGAAGGCGTATTATGGATTTCTTAAAATACTATGTG
rJMSF038F11+ CGGGATATGGNGATGCGCTCGATAAGAAGGCGTATTATGGATTTCTTAAAATACTATGTG
                      ____________________________________________________________
consensus CGGGATATGGAGATGCGCTCGATAAGAAGGCGTATTATGGATTTCTTAAAATACTATGTG
 
. : . : . : . : . : . :
rJMFF011J11+ GGATCGAGAGGATCGATCACGCCATGAATGTTTTCACGAAGATGAAAGAAGATGGTTGCA
rJMSF038F11+ GGATCGAGAGGATCGATCACGCCATGAATGTTTTCACGAAGATGAAAGAAGATGGTTGCA
                      ____________________________________________________________
consensus GGATCGAGAGGATCGATCACGCCATGAATGTTTTCACGAAGATGAAAGAAGATGGTTGCA
 
. : . : . : . : . : . :
rJMFF011J11+ AACCGGGAATTAAGACGTATGAGTTATTGATGGGAAGGTTGGTTGCTCATGGCCGGATGG
rJMSF038F11+ AACCGGGAATTAAGACGTATGAGTTATTGATGGGAAGGTTGGTTGCTCATGGCCGGATGG
                      ____________________________________________________________
consensus AACCGGGAATTAAGACGTATGAGTTATTGATGGGAAGGTTGGTTGCTCATGGCCGGATGG
 
. : . : . : . : . : . :
rJMFF011J11+ ATAAGGCAAATGCTCTTTATAAAGAAGCCGAGAGCGATGGGATTCAAGTTGAGCCAAAGG
rJMSF038F11+ ATAAGGCAAATGCTCTTTATAAAGAAGCCGAGAGCGATGGGATTCAAGTTGAGCCAAAGG
                      ____________________________________________________________
consensus ATAAGGCAAATGCTCTTTATAAAGAAGCCGAGAGCGATGGGATTCAAGTTGAGCCAAAGG
 
. : . : . : . : . : . :
rJMFF011J11+ CATATAAGGTGGATCCTAGATTTGCAAAGAAGAAGTCTTCTACTTGCGTGAAGAAGGAGA
rJMSF038F11+ CATATAAGGTGGATCCTAGATTTGCAAAGAAGAAGTCTTCTACTTGCGTGAAGAAGGAGA
                      ____________________________________________________________
consensus CATATAAGGTGGATCCTAGATTTGCAAAGAAGAAGTCTTCTACTTGCGTGAAGAAGGAGA
 
. : . : . : . : . : . :
rJMFF011J11+ AGAAGCGAGAGACATTGCCCGAGAAAATGGCTAGGAAGAGGAGAACTCTCAAGAAAATCC
rJMSF038F11+ AGAAGCGAGAGACATTGCCCGAGAAAATGGCTAGGAAGAGGAGAACTCTCAAGAAAATCC
                      ____________________________________________________________
consensus AGAAGCGAGAGACATTGCCCGAGAAAATGGCTAGGAAGAGGAGAACTCTCAAGAAAATCC
 
. : . : . : . : . : . :
rJMFF011J11+ GGCTTAGTTATGTGAAGAAGCCCAGAGGAACACGTCGAGCCCTTTGATCAAAATCGCATT
rJMSF038F11+ GGCTTAGTTATGTGAAGAAGCCCAGAGGAACACGTCGAGCCCTTTGATCAAAATCGCATT
                      ____________________________________________________________
consensus GGCTTAGTTATGTGAAGAAGCCCAGAGGAACACGTCGAGCCCTTTGATCAAAATCGCATT
 
. : . : . : . : . : . :
rJMFF011J11+ TGATGTTGTCAAGAAAAACTCCATGAAAGGTTAAACTTCACTATAGAGTAATTCTTTCAC
rJMSF038F11+ TGATGTTGTCAAGAAAAACTCCATGAAAGGTTAAACTTCACTATAGAGTAATTCTTTCAC
                      ____________________________________________________________
consensus TGATGTTGTCAAGAAAAACTCCATGAAAGGTTAAACTTCACTATAGAGTAATTCTTTCAC
 
. : . : . : . : . : . :
rJMFF011J11+ TTGATTTTACTGGTGGCTTCTTGTTTTTAGATCAGTTTTGCAACATTAGA
rJMSF038F11+ TTGATTTTACTGGTGGCTTCTTGTTTTTAGATCAGTTTTGCAACATTAGAAATAAATTTT
                      ____________________________________________________________
consensus TTGATTTTACTGGTGGCTTCTTGTTTTTAGATCAGTTTTGCAACATTAGAAATAAATTTT
 
. : . : . : . : . : . :
rJMSF038F11+ CAGTTCAAACTTCAATGCTCCGACTCTGCTATACATGAGATTTTAGCTGTTAAGTGTTTG
                      ____________________________________________________________
consensus CAGTTCAAACTTCAATGCTCCGACTCTGCTATACATGAGATTTTAGCTGTTAAGTGTTTG
 
. : . : . : . : . : . :
rJMSF038F11+ GTTTTGTTCATTTTAGAGTGTCAATCAACATCAGAGCTTGGTATATGACTCCAAGCATTC
                      ____________________________________________________________
consensus GTTTTGTTCATTTTAGAGTGTCAATCAACATCAGAGCTTGGTATATGACTCCAAGCATTC