Contig 010038:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS034F03Sequence598010038 (2)emb|CDO99605.1|1e-12unnamed protein product [Coffea canephora]
JMSF037F07Sequence687001986 (5)ref|XP_006594334.1|3e-85PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Gl716010038 (2)emb|CDO99605.1|2e-37unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS034F03+                       CAAAGTAATTCACATTTCAATATTTCATACCCAAGTAATTCAGCCAAG
                      ____________________________________________________________
consensus                         CAAAGTAATTCACATTTCAATATTTCATACCCAAGTAATTCAGCCAAG
 
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JMFS034F03+           TGAACTATACATTTCATGAACTACTGGGATGGCTACCCATACATCTCATTGAACTTGATT
                      ____________________________________________________________
consensus             TGAACTATACATTTCATGAACTACTGGGATGGCTACCCATACATCTCATTGAACTTGATT
 
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JMFS034F03+           ATTACATGATCTACATGACTATATATGCACTGCTGACACAAACATACATACAAACTTCAG
rJMSF037F07-              CATGATCTACATGACTATATATGCACTGCTGACACAAACATACATACAAACTTCAG
                      ____________________________________________________________
consensus             ATTACATGATCTACATGACTATATATGCACTGCTGACACAAACATACATACAAACTTCAG
 
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JMFS034F03+           TTCATATTCTTCTTGCAACCATATCTACAGACCTGAAACTGTGTGAAAAGCGTTACCTTT
rJMSF037F07-          TTCATATTCTTCTTGCAACCATATCTACAGACCTGAAACTGTGTGAAAAGCGTTACCTTT
                      ____________________________________________________________
consensus             TTCATATTCTTCTTGCAACCATATCTACAGACCTGAAACTGTGTGAAAAGCGTTACCTTT
 
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JMFS034F03+           GCTTGTCAACTCAGCAGCAGGGATACACTATATAGATCTGATCACATTTCTAGGCAATAC
rJMSF037F07-          GCTTGTCAACTCAGCAGCAGGGATACACTATATAGATCTGATCACATTTCTAGGCAATAC
                      ____________________________________________________________
consensus             GCTTGTCAACTCAGCAGCAGGGATACACTATATAGATCTGATCACATTTCTAGGCAATAC
 
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JMFS034F03+           TATGATATCCAAATTGTTGGGAAAAAGGCACTCATTCATGAGTAACTTGTTAGGCAGGTG
rJMSF037F07-          TATGATATCCAAATTGTTGGGAAAAAGGCACTCATTCATGAGTAACTTGTTAGGCAGGTG
                      ____________________________________________________________
consensus             TATGATATCCAAATTGTTGGGAAAAAGGCACTCATTCATGAGTAACTTGTTAGGCAGGTG
 
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JMFS034F03+           GAGTTGCTATACTGTTCTTTTGGTTTTAGACTGGAATGGATACTGAGGATGAAGCAGACT
rJMSF037F07-          GAGTTGCTATACTGTTCTTTTGGTTTTAGACTGGAATGGATACTGAGGATGAAGCAGACT
                      ____________________________________________________________
consensus             GAGTTGCTATACTGTTCTTTTGGTTTTAGACTGGAATGGATACTGAGGATGAAGCAGACT
 
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JMFS034F03+           ATGGTTGCTGAAGAACAAGGTTTAGTTGATGTGCACATTTTGCCAGGGAACCGCCTCTCT
rJMSF037F07-          ATGGTTGCTGAAGAACAAGGTTTAGTTGATGTGCACATTTTGCCAGGGAACCGCCTCTCT
                      ____________________________________________________________
consensus             ATGGTTGCTGAAGAACAAGGTTTAGTTGATGTGCACATTTTGCCAGGGAACCGCCTCTCT
 
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JMFS034F03+           GTATAAGTGCTGGAATAGTGTTCTGGATGATTTGAAAATGCGCAATGCACTGTCTGCAAC
rJMSF037F07-          GTATAAGTGCTGGAATAGTGTTCTGGATGATTTGAAAATGCGCAATGCACTGTCTGCAAC
                      ____________________________________________________________
consensus             GTATAAGTGCTGGAATAGTGTTCTGGATGATTTGAAAATGCGCAATGCACTGTCTGCAAC
 
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JMFS034F03+           ACTCGATTCTTTCCTCTGCGTGAAGATCAACGCCTACAGGTGGAGGTGCTGAAACCGCTG
rJMSF037F07-          ACTCGATTCTTTCCTCTGCGTGAAGATCAACGCCTACAGGTGGAGGTGCTGAAACCGCTG
                      ____________________________________________________________
consensus             ACTCGATTCTTTCCTCTGCGTGAAGATCAACGCCTACAGGTGGAGGTGCTGAAACCGCTG
 
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JMFS034F03+           ATTGGACTAC                                                  
rJMSF037F07-          ATTGGACTACTGGACCGAAGACTGCCACAAGCTTCAGTAGCATTTCCAAAGAAATGAATG
                      ____________________________________________________________
consensus             ATTGGACTACTGGACCGAAGACTGCCACAAGCTTCAGTAGCATTTCCAAAGAAATGAATG
 
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rJMSF037F07-          CTTGCCTTTCAACCTTGCTATCTAGCAAGTCCAATAGCACAGGAAGCAAGGCAGTGAATA
                      ____________________________________________________________
consensus             CTTGCCTTTCAACCTTGCTATCTAGCAAGTCCAATAGCACAGGAAGCAAGGCAGTGAATA
 
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rJMSF037F07-          GATCCAGCGTGATAATCTCCATTCTATCCGTGAGAACACTAAGTATGTCTGCTTGTGCTG
                      ____________________________________________________________
consensus             GATCCAGCGTGATAATCTCCATTCTATCCGTGAGAACACTAAGTATGTCTGCTTGTGCTG
 
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rJMSF037F07-          ATTGATCTGGCANCTTCTTCAAGGCACCAATAGCACCCTTAATATCATTCCTTTCCCAGA
                      ____________________________________________________________
consensus             ATTGATCTGGCANCTTCTTCAAGGCACCAATAGCACCCTTAATATCATTCCTTTCCCAGA