| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012N17 | Sequence | 430 | 009457 (3) | ref|XP_009797320.1| | 2e-23 | PREDICTED: uncharacterized protein LOC104243766 isoform X1 [Nicotiana sylvestri | 800 | 010033 (3) | ref|XP_009797328.1| | 5e-38 | PREDICTED: uncharacterized protein LOC104243766 isoform X2 [Nicotiana sylvestri |
| JMSF036G22 | Sequence | 563 | 009457 (3) | ref|XP_006347864.1| | 4e-45 | PREDICTED: ankyrin repeat domain-containing protein 12-like [Solanum tuberosum] | 784 | 010033 (3) | ref|XP_009797328.1| | 1e-41 | PREDICTED: uncharacterized protein LOC104243766 isoform X2 [Nicotiana sylvestri |
| JMSF044A12 | Sequence | 504 | 009457 (3) | ref|XP_006347864.1| | 1e-37 | PREDICTED: ankyrin repeat domain-containing protein 12-like [Solanum tuberosum] | 551 | 010033 (3) | ref|XP_009797328.1| | 1e-28 | PREDICTED: uncharacterized protein LOC104243766 isoform X2 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMSF012N17+ CGGANGGCATTCCTTACCAAAACCGAGATCCGT
rJMSF036G22+ CCGT
____________________________________________________________
consensus CGGANGGCATTCCTTACCAAAACCGAGATCCGT
. : . : . : . : . : . :
rJMSF012N17+ TAGGAGAAGGCATCATAAATCATCAAGAAGTAATGATGATGCTGGAAATTTTGAAGATGC
rJMSF036G22+ TAGGAGAAGGCATCATAAATCATCAAGAAGTAATGATGATGCTGGAAATTTTGAAGATGC
____________________________________________________________
consensus TAGGAGAAGGCATCATAAATCATCAAGAAGTAATGATGATGCTGGAAATTTTGAAGATGC
. : . : . : . : . : . :
rJMSF012N17+ TAGGGTTGTGAATAGAAGTAATCGAAGAAGGGAACATTCAAAAACAGGGCTACAGGTCTT
rJMSF036G22+ TAGGGTTGTGAATAGAAGTAATCGAGGAAGGGAACATTCAAAAACAGGGCTACAGGTCTT
____________________________________________________________
consensus TAGGGTTGTGAATAGAAGTAATCGAGGAAGGGAACATTCAAAAACAGGGCTACAGGTCTT
. : . : . : . : . : . :
rJMSF012N17+ GCTTGATGATAGGCACCACCAAAGAGATGACGAGGAAAGGGTGATAGATAAACTCTTGAT
rJMSF036G22+ GCTTGATGATAGGCACCACCAAAGAGATGACGAGGAAAGGGTGATAGATAAACTCTTGAT
____________________________________________________________
consensus GCTTGATGATAGGCACCACCAAAGAGATGACGAGGAAAGGGTGATAGATAAACTCTTGAT
. : . : . : . : . : . :
rJMSF012N17+ GCACTACAGTAAGAAATCATCCAACTATGACATAGAAAAGTTAAGGAAAAAGCCAGAAAC
rJMSF044A12+ AGAAAAGTTAAGGAAAAAGCCAGAAAC
rJMSF036G22+ GCACTACAGTAAGAAATCATCCAACTATGACATAGAAAAGTTAAGGAAAAAGCCAGAAAC
____________________________________________________________
consensus GCACTACAGTAAGAAATCATCCAACTATGACATAGAAAAGTTAAGGAAAAAGCCAGAAAC
. : . : . : . : . : . :
rJMSF012N17+ TCATGGTTCACACCCGAGAGGCAGTGATGCTGATAAAACCTTACATGAGAGGATCAGAAG
rJMSF044A12+ TCATGGTTCACACCCGAGAGGCAGTGATGCTGATAAAACCTTACATGAGAGGATCAGAAG
rJMSF036G22+ TCATGGTTCACACCCGAGAGGCAGTGATGCTGATAAAACCTTACATGAGAGGATCAGAAG
____________________________________________________________
consensus TCATGGTTCACACCCGAGAGGCAGTGATGCTGATAAAACCTTACATGAGAGGATCAGAAG
. : . : . : . : . : . :
rJMSF012N17+ AGATGAATGTGAAATAAATTCTGATGTACCTCCACCACCTACAAGATCTATTTCTCTTCC
rJMSF044A12+ AGATGAATGTGAAATAAATTCTGATGTACCTCCACCACCTACAAGATCTATTTCTCTTCC
rJMSF036G22+ AGATGAATGTGAAATAAATTCTGATGTACCTCCACCACCTACAAGATCTATTTCTCTTCC
____________________________________________________________
consensus AGATGAATGTGAAATAAATTCTGATGTACCTCCACCACCTACAAGATCTATTTCTCTTCC
. : . : . : . : . : . :
rJMSF012N17+ ACACGAACAACCTACTCCTTCAGAGACAAAAAAGGTTTACATGCGTGCCAATTCCTTTCA
rJMSF044A12+ ACACGAACAACCTACTCCTTCAGAGACAAAAAAGGTTTACATGCGTGCCAATTCNTTTCA
rJMSF036G22+ ACACGAACAACCTACTCCTTCAGAGACAAAAAAGGTTTACATGCGTGCCAATTCCTTTCA
____________________________________________________________
consensus ACACGAACAACCTACTCCTTCAGAGACAAAAAAGGTTTACATGCGTGCCAATTCCTTTCA
. : . : . : . : . : . :
rJMSF012N17+ GCCTGACAACCAGGCACGTCATGTCCATCCAAAATTACCTGACTATGAAGATTTGGCTGC
rJMSF044A12+ GCCTGACAACCAGGCACGTCATGTCCATCCAAAATTACCTGACTATGAAGATTTGGCTGC
rJMSF036G22+ GCCTGACAACCAGGCACGTCATGTCCATCCAAAATTACCTGACTATGAAGATTTGGCTGC
____________________________________________________________
consensus GCCTGACAACCAGGCACGTCATGTCCATCCAAAATTACCTGACTATGAAGATTTGGCTGC
. : . : . : . : . : . :
rJMSF012N17+ CCAATTTGCTGCCCTGAGAGGAATATGAAGGTGGCTGGCCATCTTGAGAGGAGAAACTAA
rJMSF044A12+ CCAATTTGCTGCCCTGAGAGGAATATGAAGGTGGCTGGCCATCTTGAGAGGAGAAACTAA
rJMSF036G22+ CCAATTTGCTGCCCTGAGAGGAATATGAAGGTGGCTGGCCATCTTGAGAGGAGAAACTAA
____________________________________________________________
consensus CCAATTTGCTGCCCTGAGAGGAATATGAAGGTGGCTGGCCATCTTGAGAGGAGAAACTAA
. : . : . : . : . : . :
rJMSF012N17+ TCACTGATATTCCTTGTTGACCTCCAATCTTTGATTCTTTGGGTTCATGAGTTGTTATAA
rJMSF044A12+ TCACTGATATTCCTTGTTGACCTCCAATCTTTGATTCTTTGGGTTCATGAGTTGTTATAA
rJMSF036G22+ TCACTGATATTCCTTGTTGACCTCCAATCTTTGATTCTTTGGGTTCATGAGTTGTTATAA
____________________________________________________________
consensus TCACTGATATTCCTTGTTGACCTCCAATCTTTGATTCTTTGGGTTCATGAGTTGTTATAA
. : . : . : . : . : . :
rJMSF012N17+ AGTGGCGCTAAAATCACAAACAAATACACGAGTACGACTTTCTTTCCTGAATCCGCATTC
rJMSF044A12+ AGTGGCGCTAAAATCACAAACAAATACACGAGTACGACTTTCTTTCCTGAATCCGCATTC
rJMSF036G22+ AGTGGCGCTAAAATCACAAACAAATACACGAGTACGACTTTCTTTCCTGAATCCGCATTC
____________________________________________________________
consensus AGTGGCGCTAAAATCACAAACAAATACACGAGTACGACTTTCTTTCCTGAATCCGCATTC
. : . : . : . : . : . :
rJMSF012N17+ TTGAGTGTATAAGTATTGTTTACCATTCAGTTTTACTGATTGTAAAGTTGAACAGTTCAT
rJMSF044A12+ TTGAGTGTATAAGTATTGTTTACCATTCAGTTTTACTGATTGTAAAGTTGAACAGTTCAT
rJMSF036G22+ TTGAGTGTATAAGTATTGTTTACCATTCAGTTTTACTGATTGTAAAGTTGAACAGTTCAT
____________________________________________________________
consensus TTGAGTGTATAAGTATTGTTTACCATTCAGTTTTACTGATTGTAAAGTTGAACAGTTCAT
. : . : . : . : . : . :
rJMSF012N17+ GTAACATTGTCCCCAATGTCATCTGTACTTGAGAGT
rJMSF044A12+ GTAACATTGTCCCCAATGTCATCTGTACTTGAGAGT
rJMSF036G22+ GTAACATTGTCCCCAATGTCATCTGTACTTGAGAGTTGAAATTGAGAATGTTCCACAGCT
____________________________________________________________
consensus GTAACATTGTCCCCAATGTCATCTGTACTTGAGAGTTGAAATTGAGAATGTTCCACAGCT