Contig 010031:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035P18Sequence624010031 (2)ref|XP_009595867.1|9e-51PREDICTED: RING-H2 finger protein ATL80 [Nicotiana tomentosiformis]703010031 (2)ref|XP_009766634.1|4e-54PREDICTED: RING-H2 finger protein ATL8-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF035P18- GGATTAATTCTAGTATTCTACTGCTGCTACTTCTCTAAATACACGCACAA
                      ____________________________________________________________
consensus GGATTAATTCTAGTATTCTACTGCTGCTACTTCTCTAAATACACGCACAA
 
. : . : . : . : . : . :
JMSF035P18- ACTCTTTTCCGCTCCGCTCCCACAGCACAACCGACGCCGTCCTCTTCCACATGACTGATC
rJMSF035P18+ TCCCACAGCACAACNGACGCCGTCNTCTTCCACATGACTGATC
                      ____________________________________________________________
consensus ACTCTTTTCCGCTCCGCTCCCACAGCACAACCGACGCCGTCCTCTTCCACATGACTGATC
 
. : . : . : . : . : . :
JMSF035P18- ATTCCAGCATTCACGGCGGTGTAAAATCGTCGAATCAACCTTCCTCTACTCCACCGCCTA
rJMSF035P18+ ATTCCAGCATTCACGGCGGTGTAAAATCGTCGAATCAACCTTCCTCTACTCCACCGCCTA
                      ____________________________________________________________
consensus ATTCCAGCATTCACGGCGGTGTAAAATCGTCGAATCAACCTTCCTCTACTCCACCGCCTA
 
. : . : . : . : . : . :
JMSF035P18- ACGATTCATCTCGAATCGGAGGCTTCGATTCCGACTTCGTTGTCATCCTCGCCGCGCTTC
rJMSF035P18+ ACGATTCATCTCGAATCGGAGGCTTCGATTCCGACTTCGTTGTCATCCTCGCCGCGCTTC
                      ____________________________________________________________
consensus ACGATTCATCTCGAATCGGAGGCTTCGATTCCGACTTCGTTGTCATCCTCGCCGCGCTTC
 
. : . : . : . : . : . :
JMSF035P18- TCTGCGCCCTAATTTGCGTCCTCGGCCTGGCCGCAGTCGCTCGCTGCGCCTGGATCCGCC
rJMSF035P18+ TCTGCGCCCTAATTTGCGTCCTCGGCCTGGCCGCAGTCGCTCGCTGCGCCTGGATCCGCC
                      ____________________________________________________________
consensus TCTGCGCCCTAATTTGCGTCCTCGGCCTGGCCGCAGTCGCTCGCTGCGCCTGGATCCGCC
 
. : . : . : . : . : . :
JMSF035P18- GGATCTCTGCCGGAGCCGCCGCTGCTCCTCCGCCTCCGGCCAACAAAGGCCTGAAGAAGA
rJMSF035P18+ GGATCTCTGCCGGAGCCGCCGCTGCTCCTCCGCCTCCGGCCAACAAAGGCCTGAAGAAGA
                      ____________________________________________________________
consensus GGATCTCTGCCGGAGCCGCCGCTGCTCCTCCGCCTCCGGCCAACAAAGGCCTGAAGAAGA
 
. : . : . : . : . : . :
JMSF035P18- AGATCCTGAAGTCGTTCCCCAAGCTCAGCTTCGCCCCCGAACTCGCCTCCAAATTCTCCG
rJMSF035P18+ AGATCCTGAAGTCGTTCCCCAAGCTCAGCTTCGCCCCCGAACTCGCCTCCAAATTCTCCG
                      ____________________________________________________________
consensus AGATCCTGAAGTCGTTCCCCAAGCTCAGCTTCGCCCCCGAACTCGCCTCCAAATTCTCCG
 
. : . : . : . : . : . :
JMSF035P18- AATGCGCCATTTGCCTCACGGAGTTCGCCTCCGGAGACGAAATCCGAGTCCTGCCTCACT
rJMSF035P18+ AATGCGCCATTTGCCTCACGGAGTTCGCCTCCGGAGACGAAATCCGAGTCCTGCCTCACT
                      ____________________________________________________________
consensus AATGCGCCATTTGCCTCACGGAGTTCGCCTCCGGAGACGAAATCCGAGTCCTGCCTCACT
 
. : . : . : . : . : . :
JMSF035P18- GCGGCCACGGCTTCCACGTTGGATGTATTGACACTTGGCTCGGATCTCACTCCTCCTGTC
rJMSF035P18+ GCGGCCACGGCTTCCACGTTGGATGTATTGACACTTGGCTCGGATCTCACTCCTCCTGTC
                      ____________________________________________________________
consensus GCGGCCACGGCTTCCACGTTGGATGTATTGACACTTGGCTCGGATCTCACTCCTCCTGTC
 
. : . : . : . : . : . :
JMSF035P18- CGTCTTGCCGCCAGATCCTGGTGTCCTCCAGGTGCCAGAAGTGCGGCGAANTGCCGGCTC
rJMSF035P18+ CGTCTTGCCGCCAGATCCTGGTGTCCTCCAGGTGCCAGAAGTGCGGCGAATTGCCGGCTC
                      ____________________________________________________________
consensus CGTCTTGCCGCCAGATCCTGGTGTCCTCCAGGTGCCAGAAGTGCGGCGAATTGCCGGCTC
 
. : . : . : . : . : . :
JMSF035P18- CTACCTCTTCATCCACCGCCGCACCTGTGGCCGA
rJMSF035P18+ CTACCTCTTCATCCACCGCCGCACCTGTGGCCGACACCAGATTTCCTCCCAGTGCCTATC
                      ____________________________________________________________
consensus CTACCTCTTCATCCACCGCCGCACCTGTGGCCGACACCAGATTTCCTCCCAGTGCCTATC
 
. : . : . : . : . : . :
rJMSF035P18+ ACGTAAATCCTTTTTTACCTTAGTTTAGCTAGCCTAGCTTTACTCCTTCCACTTTTCTGT
                      ____________________________________________________________
consensus ACGTAAATCCTTTTTTACCTTAGTTTAGCTAGCCTAGCTTTACTCCTTCCACTTTTCTGT
 
. : . : . : . : . : . :
rJMSF035P18+ ATGTATGTATAATGTATGTATATATACAAGTGTACTGTGTAAAACCCCTATTATCACCAT
                      ____________________________________________________________
consensus ATGTATGTATAATGTATGTATATATACAAGTGTACTGTGTAAAACCCCTATTATCACCAT