Contig 010031:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035P18Sequence624010031 (2)ref|XP_009595867.1|9e-51PREDICTED: RING-H2 finger protein ATL80 [Nicotiana tomentosiformis]703010031 (2)ref|XP_009766634.1|4e-54PREDICTED: RING-H2 finger protein ATL8-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF035P18-                     GGATTAATTCTAGTATTCTACTGCTGCTACTTCTCTAAATACACGCACAA
                      ____________________________________________________________
consensus                       GGATTAATTCTAGTATTCTACTGCTGCTACTTCTCTAAATACACGCACAA
 
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JMSF035P18-           ACTCTTTTCCGCTCCGCTCCCACAGCACAACCGACGCCGTCCTCTTCCACATGACTGATC
rJMSF035P18+                           TCCCACAGCACAACNGACGCCGTCNTCTTCCACATGACTGATC
                      ____________________________________________________________
consensus             ACTCTTTTCCGCTCCGCTCCCACAGCACAACCGACGCCGTCCTCTTCCACATGACTGATC
 
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JMSF035P18-           ATTCCAGCATTCACGGCGGTGTAAAATCGTCGAATCAACCTTCCTCTACTCCACCGCCTA
rJMSF035P18+          ATTCCAGCATTCACGGCGGTGTAAAATCGTCGAATCAACCTTCCTCTACTCCACCGCCTA
                      ____________________________________________________________
consensus             ATTCCAGCATTCACGGCGGTGTAAAATCGTCGAATCAACCTTCCTCTACTCCACCGCCTA
 
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JMSF035P18-           ACGATTCATCTCGAATCGGAGGCTTCGATTCCGACTTCGTTGTCATCCTCGCCGCGCTTC
rJMSF035P18+          ACGATTCATCTCGAATCGGAGGCTTCGATTCCGACTTCGTTGTCATCCTCGCCGCGCTTC
                      ____________________________________________________________
consensus             ACGATTCATCTCGAATCGGAGGCTTCGATTCCGACTTCGTTGTCATCCTCGCCGCGCTTC
 
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JMSF035P18-           TCTGCGCCCTAATTTGCGTCCTCGGCCTGGCCGCAGTCGCTCGCTGCGCCTGGATCCGCC
rJMSF035P18+          TCTGCGCCCTAATTTGCGTCCTCGGCCTGGCCGCAGTCGCTCGCTGCGCCTGGATCCGCC
                      ____________________________________________________________
consensus             TCTGCGCCCTAATTTGCGTCCTCGGCCTGGCCGCAGTCGCTCGCTGCGCCTGGATCCGCC
 
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JMSF035P18-           GGATCTCTGCCGGAGCCGCCGCTGCTCCTCCGCCTCCGGCCAACAAAGGCCTGAAGAAGA
rJMSF035P18+          GGATCTCTGCCGGAGCCGCCGCTGCTCCTCCGCCTCCGGCCAACAAAGGCCTGAAGAAGA
                      ____________________________________________________________
consensus             GGATCTCTGCCGGAGCCGCCGCTGCTCCTCCGCCTCCGGCCAACAAAGGCCTGAAGAAGA
 
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JMSF035P18-           AGATCCTGAAGTCGTTCCCCAAGCTCAGCTTCGCCCCCGAACTCGCCTCCAAATTCTCCG
rJMSF035P18+          AGATCCTGAAGTCGTTCCCCAAGCTCAGCTTCGCCCCCGAACTCGCCTCCAAATTCTCCG
                      ____________________________________________________________
consensus             AGATCCTGAAGTCGTTCCCCAAGCTCAGCTTCGCCCCCGAACTCGCCTCCAAATTCTCCG
 
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JMSF035P18-           AATGCGCCATTTGCCTCACGGAGTTCGCCTCCGGAGACGAAATCCGAGTCCTGCCTCACT
rJMSF035P18+          AATGCGCCATTTGCCTCACGGAGTTCGCCTCCGGAGACGAAATCCGAGTCCTGCCTCACT
                      ____________________________________________________________
consensus             AATGCGCCATTTGCCTCACGGAGTTCGCCTCCGGAGACGAAATCCGAGTCCTGCCTCACT
 
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JMSF035P18-           GCGGCCACGGCTTCCACGTTGGATGTATTGACACTTGGCTCGGATCTCACTCCTCCTGTC
rJMSF035P18+          GCGGCCACGGCTTCCACGTTGGATGTATTGACACTTGGCTCGGATCTCACTCCTCCTGTC
                      ____________________________________________________________
consensus             GCGGCCACGGCTTCCACGTTGGATGTATTGACACTTGGCTCGGATCTCACTCCTCCTGTC
 
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JMSF035P18-           CGTCTTGCCGCCAGATCCTGGTGTCCTCCAGGTGCCAGAAGTGCGGCGAANTGCCGGCTC
rJMSF035P18+          CGTCTTGCCGCCAGATCCTGGTGTCCTCCAGGTGCCAGAAGTGCGGCGAATTGCCGGCTC
                      ____________________________________________________________
consensus             CGTCTTGCCGCCAGATCCTGGTGTCCTCCAGGTGCCAGAAGTGCGGCGAATTGCCGGCTC
 
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JMSF035P18-           CTACCTCTTCATCCACCGCCGCACCTGTGGCCGA                          
rJMSF035P18+          CTACCTCTTCATCCACCGCCGCACCTGTGGCCGACACCAGATTTCCTCCCAGTGCCTATC
                      ____________________________________________________________
consensus             CTACCTCTTCATCCACCGCCGCACCTGTGGCCGACACCAGATTTCCTCCCAGTGCCTATC
 
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rJMSF035P18+          ACGTAAATCCTTTTTTACCTTAGTTTAGCTAGCCTAGCTTTACTCCTTCCACTTTTCTGT
                      ____________________________________________________________
consensus             ACGTAAATCCTTTTTTACCTTAGTTTAGCTAGCCTAGCTTTACTCCTTCCACTTTTCTGT
 
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rJMSF035P18+          ATGTATGTATAATGTATGTATATATACAAGTGTACTGTGTAAAACCCCTATTATCACCAT
                      ____________________________________________________________
consensus             ATGTATGTATAATGTATGTATATATACAAGTGTACTGTGTAAAACCCCTATTATCACCAT