Contig 010030:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS033H02Sequence337010030 (2)
JMSF035O07Sequence648023248ref|XP_010657567.1|5e-56PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130706010030 (2)ref|XP_009771802.1|2e-57PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140

Alignment

This contig is upended


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JMFS033H02+                      ACAAAATTTATTCAATATACCATTATCATACTATTTAATAAGGTATTTT
                      ____________________________________________________________
consensus                        ACAAAATTTATTCAATATACCATTATCATACTATTTAATAAGGTATTTT
 
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JMFS033H02+           GGATTTTTACATGCGTAACAAAAACTAGCGCATGAGGAAAGTGGAGCCGAAAGCCATGAC
rJMSF035O07-             TTTTTACATATGTAACAAAAACTAGCAAATGAGGAAAGTGGAGCCGAAAGCCATGAC
                      ____________________________________________________________
consensus             GGATTTTTACATGTGTAACAAAAACTAGCGCATGAGGAAAGTGGAGCCGAAAGCCATGAC
 
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JMFS033H02+           GGTTTTAGTAGCTGTGGAAGCACAATAAGTACCATGAGAGCGATAG              
rJMSF035O07-          GATTTTAGTAGCTGCGGAAGCATAATAAGTACTATGAGAGCGATAGAGACGTGAAGCTGA
                      ____________________________________________________________
consensus             GGTTTTAGTAGCTGTGGAAGCATAATAAGTACTATGAGAGCGATAGAGACGTGAAGCTGA
 
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rJMSF035O07-          AAAACAAACAACGTTGCTGGTAATGCGATTGCAGAAACTGTGATCATGTCCCCTAGCTGC
                      ____________________________________________________________
consensus             AAAACAAACAACGTTGCTGGTAATGCGATTGCAGAAACTGTGATCATGTCCCCTAGCTGC
 
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rJMSF035O07-          CTATCTACCCTCTCTAATGATCTCATGAAGCATAGCCCTGGATGGAGTATCAGTTGTTGA
                      ____________________________________________________________
consensus             CTATCTACCCTCTCTAATGATCTCATGAAGCATAGCCCTGGATGGAGTATCAGTTGTTGA
 
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rJMSF035O07-          CACACTTGTAGTAGCCACTGATGAATAATCGCCTGTCGTTTGGGAACCATGAATGTCAGT
                      ____________________________________________________________
consensus             CACACTTGTAGTAGCCACTGATGAATAATCGCCTGTCGTTTGGGAACCATGAATGTCAGT
 
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rJMSF035O07-          CATGAAGCTGCTTCTATCATCAAACTTCCAGTCAGTGAGGTAGCTGGGCCTTGAAGTTAC
                      ____________________________________________________________
consensus             CATGAAGCTGCTTCTATCATCAAACTTCCAGTCAGTGAGGTAGCTGGGCCTTGAAGTTAC
 
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rJMSF035O07-          GGTTGGTACTTCAGCGTCACCTGAAAGCATTGCCACCACACGGGACATTGATGGCCGCAA
                      ____________________________________________________________
consensus             GGTTGGTACTTCAGCGTCACCTGAAAGCATTGCCACCACACGGGACATTGATGGCCGCAA
 
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rJMSF035O07-          TGAGGGGGATGCTTGGGTGCACAAAAGCGATACCCCTATCACCCGTTTCACTTCATCCTT
                      ____________________________________________________________
consensus             TGAGGGGGATGCTTGGGTGCACAAAAGCGATACCCCTATCACCCGTTTCACTTCATCCTT
 
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rJMSF035O07-          ATTGAAACCTGATAGACGTTCATCCATCACATCAACGTCGCGATTATTCTCATGGAGATG
                      ____________________________________________________________
consensus             ATTGAAACCTGATAGACGTTCATCCATCACATCAACGTCGCGATTATTCTCATGGAGATG
 
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rJMSF035O07-          CCAAGCCCATTCAAGAAGATATATCTTATCTTGTTCCAAGCTCGAGTCAGAGTTTGGCCG
                      ____________________________________________________________
consensus             CCAAGCCCATTCAAGAAGATATATCTTATCTTGTTCCAAGCTCGAGTCAGAGTTTGGCCG
 
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rJMSF035O07-          ACCACTGACAATCTCCATGGCAACGACTCCNAAGCTAAATACATCAGCCTTCTCAGTAAG
                      ____________________________________________________________
consensus             ACCACTGACAATCTCCATGGCAACGACTCCNAAGCTAAATACATCAGCCTTCTCAGTAAG