Contig 010028:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035H21+                                                            AAATGATAGC
                      ____________________________________________________________
consensus                                                               AAATGATAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035H21+          GACCATTTGAATTGATGATGACGAGTCTGGTTTTGTGTTTTTCTGCTTCCATCTCATGTT
                      ____________________________________________________________
consensus             GACCATTTGAATTGATGATGACGAGTCTGGTTTTGTGTTTTTCTGCTTCCATCTCATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+                          CAAATAGGTTCTCTATAGCAATATCGAGTTTNGTGGACGAGCCA
rJMSF035H21+          CTGCATTTCCCCGCCGCAAATAGGTTCTCTATAGCAATATCGAGTTTTGTGGACGAGCCA
                      ____________________________________________________________
consensus             CTGCATTTCCCCGCCGCAAATAGGTTCTCTATAGCAATATCGAGTTTTGTGGACGAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          TTTTAACTACAGGGTATCTATACTCGAGAGAAAGCTTTGGCAAACGACTTTGACAGTAAT
rJMSF035H21+          TTTTAACTACAGGGTATCTATACTCGAGAGAAAGCTTTGGCAAACGACTTTGACAGTAAT
                      ____________________________________________________________
consensus             TTTTAACTACAGGGTATCTATACTCGAGAGAAAGCTTTGGCAAACGACTTTGACAGTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          TTAACACAATCTTGCAAGGAGAGAGTGCTATCGTGCTAAAGCAAAGGGAGCAATCCGTTT
rJMSF035H21+          TTAACACAATCTTGCAAGGAGAGAGTGCTATCGTGCTAAAGCAAAGGGAGCAATCCGTTT
                      ____________________________________________________________
consensus             TTAACACAATCTTGCAAGGAGAGAGTGCTATCGTGCTAAAGCAAAGGGAGCAATCCGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          ATCATTTGCCCAAAGACTTGTGTGACAAATACAAACCGGGAAACACACGGGCATATTTCA
rJMSF035H21+          ATCATTTGCCCAAAGACTTGTGTGACAAATACAAACCGGGAAACACACGGGCATATTTCA
                      ____________________________________________________________
consensus             ATCATTTGCCCAAAGACTTGTGTGACAAATACAAACCGGGAAACACACGGGCATATTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          AGCAGGCGGGCGAGGGGGCGACAAGCAACAAAACTAACATTTTGTAACCGGGGGTAAATA
rJMSF035H21+          AGCAGGCGGGCGAGGGGGCGACAAGCAACAAAACTAACATTTTGTAACCGGGGGTAAATA
                      ____________________________________________________________
consensus             AGCAGGCGGGCGAGGGGGCGACAAGCAACAAAACTAACATTTTGTAACCGGGGGTAAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          GACGACCTGATGAGCCATTGACAACAACAGCGACAAGACAGGATATCGAACCATGTATAG
rJMSF035H21+          GACGACCTGATGAGCCATTGACAACAACAGCGACAAGACAGGATATCGAACCATGTATAG
                      ____________________________________________________________
consensus             GACGACCTGATGAGCCATTGACAACAACAGCGACAAGACAGGATATCGAACCATGTATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          TGTCTCGACTTTTCTCTTCAATTTCTCGTGCTGTTGGGTTGTGGTTCCATCCTGTATATG
rJMSF035H21+          TGTCTCGACTTTTCTCTTCAATTTCTCGTGCTGTTGGGTTGTGGTTCCATCCTGTATATG
                      ____________________________________________________________
consensus             TGTCTCGACTTTTCTCTTCAATTTCTCGTGCTGTTGGGTTGTGGTTCCATCCTGTATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          TTGCTTGGAGCCCAGGAAAAGTGGTACAAATGGAAACACACTTTCAGGAATCCCTCTGCA
rJMSF035H21+          TTGCTTGGAGCCCAGGAAAAGTGGTACAAATGGAAACACACTTTCAGGAATCCCTCTGCA
                      ____________________________________________________________
consensus             TTGCTTGGAGCCCAGGAAAAGTGGTACAAATGGAAACACACTTTCAGGAATCCCTCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          TATCAATCTGTGTTTTAGAACTGTTCATTTGGTATATGTCAAGCAAGAGGTTAGAGGTGT
rJMSF035H21+          TATCAATCTGTGTTTTAGAACTGTTCATTTGGTATATGTCAAGCAAGAGGTTAGAGGTGT
                      ____________________________________________________________
consensus             TATCAATCTGTGTTTTAGAACTGTTCATTTGGTATATGTCAAGCAAGAGGTTAGAGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          ATGCACATTTTTTCTGTTTTGGCTATACATGAGAGTACAGGCAATTTTTTATTTTTATTT
rJMSF035H21+          ATGCACATTTTTTCTGTTTTGGCTATACATGAGAGTACAGGCAATTTTTTATTTTTATTT
                      ____________________________________________________________
consensus             ATGCACATTTTTTCTGTTTTGGCTATACATGAGAGTACAGGCAATTTTTTATTTTTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035I21+          TTATGTCTTATCATTTCATGAAATAATGAATATTTCAC                      
rJMSF035H21+          TTATGTCTTATCATTTCATGAAATAATGAATATTTCACCAAACTGTATCATATTTTGGAT
                      ____________________________________________________________
consensus             TTATGTCTTATCATTTCATGAAATAATGAATATTTCACCAAACTGTATCATATTTTGGAT