| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023K19 | Sequence | 490 | 018433 | ref|XP_006364983.1| | 2e-23 | PREDICTED: protein TIC 20-I, chloroplastic [Solanum tuberosum] | 730 | 010026 (9) | gb|KDP45808.1| | 1e-78 | hypothetical protein JCGZ_17415 [Jatropha curcas] |
| JMFS076G03 | Sequence | 627 | 010026 (9) | ref|XP_006364983.1| | 4e-55 | PREDICTED: protein TIC 20-I, chloroplastic [Solanum tuberosum] | |||||
| JMSF018O23 | Sequence | 270 | 009336 (4) | 731 | 010026 (9) | ref|XP_011028897.1| | 319 | PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica] ref|XP_0110 | |||
| JMSF024N07 | Sequence | 661 | 009336 (4) | 759 | 010026 (9) | ref|XP_009587603.1| | 329 | PREDICTED: protein TIC 20-I, chloroplastic-like [Nicotiana tomentosiformis] | |||
| JMSF034H23 | Sequence | 661 | 009336 (4) | 642 | 010026 (9) | gb|EPS67780.1| | 3e-81 | tic20-like protein, partial [Genlisea aurea] | |||
| JMSF042M24 | Sequence | 777 | 010026 (9) | ref|XP_006364983.1| | 6e-86 | PREDICTED: protein TIC 20-I, chloroplastic [Solanum tuberosum] | 693 | 010026 (9) | ref|XP_011028897.1| | 305 | PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica] ref|XP_0110 |
| JMSF049O23 | Sequence | 673 | 023290 | 695 | 010026 (9) | ref|XP_011028897.1| | 290 | PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica] ref|XP_0110 | |||
| JMSF050G08 | Sequence | 655 | 009336 (4) | 701 | 010026 (9) | emb|CDP18414.1| | 2e-99 | unnamed protein product [Coffea canephora] | |||
This contig is upended
. : . : . : . : . : . :
JMSF042M24- GTCTTACTAGCCGCAGGC
____________________________________________________________
consensus GTCTTACTAGCCGCAGGC
. : . : . : . : . : . :
JMFS076G03- GAAGCCTCTCTCTCTCGCGCGCTCGCTCGCTCTGCATTTTGGTATCTATGTC
JMSF042M24- AGGATAACGAAGCCTCTCTCTCTCGCGCGCTCGCTCGCTCTGCATTTTGGTATCTATGTC
____________________________________________________________
consensus AGGATAACGAAGCCTCTCTCTCTCGCGCGCTCGCTCGCTCTGCATTTTGGTATCTATGTC
. : . : . : . : . : . :
JMFS076G03- TTTCAACAAATACTAGATCTTCATCCAAGGGCTTGAATATGAGTGCCAATGGATGCTTTC
JMSF042M24- TTTCAACAAATACTAGATCTTCATCCAAGGGCTTGAATATGAGTGCCAATGGATGCTTTC
____________________________________________________________
consensus TTTCAACAAATACTAGATCTTCATCCAAGGGCTTGAATATGAGTGCCAATGGATGCTTTC
. : . : . : . : . : . :
JMFS076G03- TGACTTCTGGGGGTGTTTATACACCCTTTGAGGCTAATTCCAAGTCCTGCAATTCAACAT
JMSF042M24- TGACTTCTGGGGGTGTTTATACACCCTTTGAGGCTAATTCCAAGTCCTGCAATTCAACAT
____________________________________________________________
consensus TGACTTCTGGGGGTGTTTATACACCCTTTGAGGCTAATTCCAAGTCCTGCAATTCAACAT
. : . : . : . : . : . :
JMFS076G03- CTGCGCGGCTTTCTCTACTGCCTTTCAGGGCAGCCTTCTCATCAATTAGGAACTCATATG
JMSF042M24- CTGCGCGGCTTTCTCTACTGCCTTTCAGGGCAGCCTTCTCATCAATTAGGAACTCATATG
____________________________________________________________
consensus CTGCGCGGCTTTCTCTACTGCCTTTCAGGGCAGCCTTCTCATCAATTAGGAACTCATATG
. : . : . : . : . : . :
JMFS076G03- CACCTCATCACAATCTTACTTCTTGCTTCTCCAAAGGAACTAGGTTTCTGAGTCTTTCAT
JMSF042M24- CACCTCATCACAATCTTACTTCTTGCTTCTCCAAAGGAACTAGGTTTCTGAGTCTTTCAT
____________________________________________________________
consensus CACCTCATCACAATCTTACTTCTTGCTTCTCCAAAGGAACTAGGTTTCTGAGTCTTTCAT
. : . : . : . : . : . :
JMFS076G03- CTGCAGCATCACCTGTTATATGTGGGGAATATCGTGGTTTCTTAGATGCTCTGCCCAAAT
JMSF042M24- CTGCAGCATCACCTGTTATATGTGGGGAATATCGTGGTTTCTTAGATGCTCTGCCCAAAT
rJMSF024N07+ AGCATCACCTGTTATATGTGGGGAATATCGTGGTTTCTTAGATGCTCTGCCCAAAT
rJMFF023K19+ TTAGATGCTCTGCCCAAAT
____________________________________________________________
consensus CTGCAGCATCACCTGTTATATGTGGGGAATATCGTGGTTTCTTAGATGCTCTGCCCAAAT
. : . : . : . : . : . :
JMFS076G03- TACCAAGGCGAAGTAGATTTTCTCTCTCCCCAAGAGCATCCAAGGATGTCCCT-AAAAGT
JMSF042M24- TACCAAGGCGAAGTAGATTTTCTCTCTCCCCAAGAGCATCCAAGGATGTCCCT-AAAAGT
rJMSF024N07+ TACCAAGGCGAAGTAGATTTTCTCTCTCCCCAAGAGCATCCAAGGATGTCCCT-AAAAGT
rJMFF023K19+ TACCAAGGCGAAGTAGATTTTCTCTCTCCCCAAGAGCATCCAAGGATGTCCCT-AAAAGT
rJMSF042M24+ AAGAGCATCCAAGGATGTCCCTAAAAAGT
rJMSF018O23+ AAGAGCATCCAAGGATGTCCCT-AAAAGT
____________________________________________________________
consensus TACCAAGGCGAAGTAGATTTTCTCTCTCCCCAAGAGCATCCAAGGATGTCCCT-AAAAGT
. : . : . : . : . : . :
JMFS076G03- TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
JMSF042M24- TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
rJMSF024N07+ TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
rJMFF023K19+ TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
rJMSF042M24+ TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
rJMSF050G08+ TTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
rJMSF018O23+ TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
rJMSF049O23+ GAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
____________________________________________________________
consensus TTTCGATACCCAGCCATGACTAAGAAGCCAAGATGGTGGTGGAGAACCATAGCATGCCTC
. : . : . : . : . : . :
JMFS076G03- CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
JMSF042M24- CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMSF024N07+ CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMFF023K19+ CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMSF042M24+ CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMSF050G08+ CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMSF018O23+ CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMSF049O23+ CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
rJMSF034H23+ CACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
____________________________________________________________
consensus CCTTATTTTATGCCCTTCCACGAGACATGGATGTATGCTGAGACTGCATACCATCTCCAC
. : . : . : . : . : . :
JMFS076G03- CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
JMSF042M24- CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMSF024N07+ CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMFF023K19+ CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMSF042M24+ CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMSF050G08+ CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMSF018O23+ CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMSF049O23+ CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
rJMSF034H23+ CACCAGTNGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
____________________________________________________________
consensus CACCAGTTGGAGGCGTTTGAATTCTTGACCTATCCTTTTCTGCAATCTCTAGGGAGGTTA
. : . : . : . : . : . :
JMFS076G03- CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCT
JMSF042M24- CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMSF024N07+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMFF023K19+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMSF042M24+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMSF050G08+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMSF018O23+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMSF049O23+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
rJMSF034H23+ CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
____________________________________________________________
consensus CCCAGTTGGTTTCTCATGGCATATTTCTTCATTGCTTACCTTGGAATTGTGAGGAGAAAG
. : . : . : . : . : . :
JMSF042M24- GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMSF024N07+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMFF023K19+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMSF042M24+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMSF050G08+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMSF018O23+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMSF049O23+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
rJMSF034H23+ GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
____________________________________________________________
consensus GAATGGCCCCATTTCTTACGGTTCCATGTGGTGATGGGTATGCTCTTGGAGATCTCCCTA
. : . : . : . : . : . :
JMSF042M24- CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGG
rJMSF024N07+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
rJMFF023K19+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
rJMSF042M24+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
rJMSF050G08+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
rJMSF018O23+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
rJMSF049O23+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
rJMSF034H23+ CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
____________________________________________________________
consensus CAAGTTATCGGAACCATAAGCCGTTGGATGCCACTATCGGTATATTGGGGCAAGATTGGA
. : . : . : . : . : . :
rJMSF024N07+ ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
rJMFF023K19+ ATGCATTTCTGGACC-CTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
rJMSF042M24+ ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
rJMSF050G08+ ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
rJMSF018O23+ ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
rJMSF049O23+ ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
rJMSF034H23+ ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
____________________________________________________________
consensus ATGCATTTCTGGACCGCTGTTGCGTTTGGTTATCTCTTTACGGTCACGCAGTGCATCGGG
. : . : . : . : . : . :
rJMSF024N07+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
rJMFF023K19+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
rJMSF042M24+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
rJMSF050G08+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
rJMSF018O23+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
rJMSF049O23+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
rJMSF034H23+ TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
____________________________________________________________
consensus TGTGCACTTACTGGGATGTATGCTGATGTTCCCTTTCTCTGTGATGCAGCTTATATTCAG
. : . : . : . : . : . :
rJMSF024N07+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
rJMFF023K19+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
rJMSF042M24+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
rJMSF050G08+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
rJMSF018O23+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
rJMSF049O23+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
rJMSF034H23+ ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
____________________________________________________________
consensus ATTCCTTATGATTAATTAGCAAAATGAGCTGTTGTACTAGTATCGAACCAGGTAATGTTT
. : . : . : . : . : . :
rJMSF024N07+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
rJMFF023K19+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
rJMSF042M24+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
rJMSF050G08+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
rJMSF018O23+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
rJMSF049O23+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
rJMSF034H23+ TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
____________________________________________________________
consensus TTGCTTATTTTGTTTGTGTAGATGCGTAATGCGTTGGGCTTTCTACTGTAAAATTTACAA
. : . : . : . : . : . :
rJMSF024N07+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGAT
rJMFF023K19+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTG
rJMSF042M24+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTGTGACTCCAGAGTTCAAATG
rJMSF050G08+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTGTGACTCCAGAGTTCAAATGTAC
rJMSF018O23+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTGTGACTCCAGAGTTCAAATGTAC
rJMSF049O23+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTGTGACTCCAGAGTTCAAATGTAC
rJMSF034H23+ TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTGTGACTCCAGAGTTCAAATGTAC
____________________________________________________________
consensus TTCTAGGCATTATTAAAGTGTCCATTAGGGAGAGATTGTGACTCCAGAGTTCAAATGTAC
. : . : . : . : . : . :
rJMSF050G08+ TTTGGATTTGACATTTGAGATGATTTCATTTTTCTGC
rJMSF018O23+ TTTGGATTTGACATTTGAGATGATTTCATTTTTCTGC
rJMSF049O23+ TTTGGATTTGACATTTGAGATGATTTCATTTTTCTGCAGTGTTG
rJMSF034H23+ TTTGGATTTGACATTTGAGATGATTTCATTTTTCTGCAGTGTTGTAATNTCTTACTTATC
____________________________________________________________
consensus TTTGGATTTGACATTTGAGATGATTTCATTTTTCTGCAGTGTTGTAATNTCTTACTTATC