Contig 010023:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029M10Sequence424011047 (3)ref|XP_008338810.1|2e-27PREDICTED: cytochrome b-c1 complex subunit 9-like [Malus domestica]241010023 (3)ref|XP_009768774.1|5e-40PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic i
JMSF034A11Sequence650010023 (3)ref|XP_006363700.1|9e-74PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic-li715010023 (3)ref|XP_010055575.1|6e-116PREDICTED: copper chaperone for superoxide dismutase, chloroplastic [Eucalyptus

Alignment

This contig is upended


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JMSF034A11-                           GGGAAGCCTTCAGCTGAACCCCCCCAAAAAAAAAATGTCATTTT
                      ____________________________________________________________
consensus                             GGGAAGCCTTCAGCTGAACCCCCCCAAAAAAAAAATGTCATTTT
 
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JMSF034A11-           TGAGGTCAGTGGCGACNGCAAAAACAACTGCGATAATAGCAGCGATACCAACGGCAGCTG
                      ____________________________________________________________
consensus             TGAGGTCAGTGGCGACNGCAAAAACAACTGCGATAATAGCAGCGATACCAACGGCAGCTG
 
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JMSF034A11-           CCATTGCAGCTTCTTCTTCCTCTTCTTCCAAGCCATCTACTTACTCTCTGCGTCTCTCCA
                      ____________________________________________________________
consensus             CCATTGCAGCTTCTTCTTCCTCTTCTTCCAAGCCATCTACTTACTCTCTGCGTCTCTCCA
 
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JMSF034A11-           AGAACCCCAGTTTCTGGTCGGTTTCTTGTTCCAACCCAATTCTCANACCCGCCGGACTTG
                      ____________________________________________________________
consensus             AGAACCCCAGTTTCTGGTCGGTTTCTTGTTCCAACCCAATTCTCANACCCGCCGGACTTG
 
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JMSF034A11-           CTTTTGCGAAATCCTACCACCCTCCTTCGGCTGTTCANATGGAGGCGCCTTCTTCCGATC
                      ____________________________________________________________
consensus             CTTTTGCGAAATCCTACCACCCTCCTTCGGCTGTTCANATGGAGGCGCCTTCTTCCGATC
 
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JMSF034A11-           AACACTTATCCTCCCTTCAGGACGGCGCCGCCTTGCCGGAATTGCTGACAGAGTTTATGG
                      ____________________________________________________________
consensus             AACACTTATCCTCCCTTCAGGACGGCGCCGCCTTGCCGGAATTGCTGACAGAGTTTATGG
 
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rJMSF029M10+                             CTGTGTTAAGTCTGTCAAGAGTAAATTGCAGGCAATTGAAG
JMSF034A11-           TGGAAATGTCTTGTGAAGGCTGTGTTAAGTCTGTCAAGAGTAAATTGCAGGCAATTGAAG
                      ____________________________________________________________
consensus             TGGAAATGTCTTGTGAAGGCTGTGTTAAGTCTGTCAAGAGTAAATTGCAGGCAATTGAAG
 
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rJMSF029M10+          GGGTGAAGAATGTGGATGTGGATNTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
JMSF034A11-           GGGTGAANAATGTGGATGTGGATCTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
rJMSF034A11+                  AATGTGGATGTGGATCTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
                      ____________________________________________________________
consensus             GGGTGAAGAATGTGGATGTGGATCTGAGTAATCAAGTTGTGAAAGTTCTTGGGTCGTTGC
 
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rJMSF029M10+          CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
JMSF034A11-           CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
rJMSF034A11+          CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
                      ____________________________________________________________
consensus             CTGTGAAGACTTTAACTGAAGCTTTGGAGCAAACTGGTCGAAAGGCTCGACTGATTGGAC
 
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rJMSF029M10+          AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
JMSF034A11-           AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
rJMSF034A11+          AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
                      ____________________________________________________________
consensus             AAGGAGTTCCAGAAGATTTTCTTATTTCTGCTGCCGTAGCTGAATTCAAAGGACCAGATA
 
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rJMSF029M10+          TTTTTGGAGTCGTTCGTTTT                                        
JMSF034A11-           TTTTTGGAGTCGTTCGTTTTGCCCAGGTGACTATGGAGATGGCTAGAATCGAAGCTAACT
rJMSF034A11+          TTTTTGGAGTCGTTCGTTTTGCCCAGGTGACTATGGAGATGGCTAGAATCGAAGCTAACT
                      ____________________________________________________________
consensus             TTTTTGGAGTCGTTCGTTTTGCCCAGGTGACTATGGAGATGGCTAGAATCGAAGCTAACT
 
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JMSF034A11-           TCACTG                                                      
rJMSF034A11+          TCACTGGACTCTCACCTGGAAGGCACGGTTGGTCAATCAATCAATATGGCGATCTGACAC
                      ____________________________________________________________
consensus             TCACTGGACTCTCACCTGGAAGGCACGGTTGGTCAATCAATCAATATGGCGATCTGACAC
 
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rJMSF034A11+          GAGGCGCAGCCAGCACTGGCAACGTGTACAATCCAACTCCCGAGACTGAAAACCAGCCAC
                      ____________________________________________________________
consensus             GAGGCGCAGCCAGCACTGGCAACGTGTACAATCCAACTCCCGAGACTGAAAACCAGCCAC
 
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rJMSF034A11+          TTGGCGACCTGGGAACACTAGATGTCGATGAAAAAGGTGAAGCATTCTTTTCTGGAGTTA
                      ____________________________________________________________
consensus             TTGGCGACCTGGGAACACTAGATGTCGATGAAAAAGGTGAAGCATTCTTTTCTGGAGTTA
 
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rJMSF034A11+          AAGAAAAGCTAAGAATCGTGGATCTCATCGGGCGAGCAATAGTTGTGTATGAAACCGAAG
                      ____________________________________________________________
consensus             AAGAAAAGCTAAGAATCGTGGATCTCATCGGGCGAGCAATAGTTGTGTATGAAACCGAAG
 
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rJMSF034A11+          ATAAATCAGATCGAGGCATTAAAGCAGCAGTGATAGCTAGAAGTGCTGGAGTTGGTGAGA
                      ____________________________________________________________
consensus             ATAAATCAGATCGAGGCATTAAAGCAGCAGTGATAGCTAGAAGTGCTGGAGTTGGTGAGA
 
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rJMSF034A11+          ACTACAAGAAACTCTGCACCTGTGATGGAGTTACTATCTGGGAAGCAAATGCCAAAATCT
                      ____________________________________________________________
consensus             ACTACAAGAAACTCTGCACCTGTGATGGAGTTACTATCTGGGAAGCAAATGCCAAAATCT
 
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rJMSF034A11+          AAATGTGTATAGTTTCTTGATTTCTGTTGGATTTGTCATACATTTGCAAGCTTGAACACA
                      ____________________________________________________________
consensus             AAATGTGTATAGTTTCTTGATTTCTGTTGGATTTGTCATACATTTGCAAGCTTGAACACA
 
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rJMSF034A11+          AACCCAGAAAGTAAAGAAGACAAGATTTACGAGATTCAACACATCCACATAAATGAAACT
                      ____________________________________________________________
consensus             AACCCAGAAAGTAAAGAAGACAAGATTTACGAGATTCAACACATCCACATAAATGAAACT