Contig 010021:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032J17Sequence644009430 (2)ref|XP_009779143.1|2e-51PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like [Nicotiana s678010021 (2)gb|EYU31064.1|3e-37hypothetical protein MIMGU_mgv1a0088351mg, partial [Erythranthe guttata]
JMSF033K02Sequence516020037434010021 (2)

Alignment

This contig is upended


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rJMSF032J17+                                           GAACAACATCAGAGTGTTTCTACCCTC
                      ____________________________________________________________
consensus                                              GAACAACATCAGAGTGTTTCTACCCTC
 
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rJMSF032J17+          GCTCAATCTTGTCAGCAGGCAGAAGATGCTNTAACGCAAGGAATGCTTAAGCTTCACCAT
                      ____________________________________________________________
consensus             GCTCAATCTTGTCAGCAGGCAGAAGATGCTNTAACGCAAGGAATGCTTAAGCTTCACCAT
 
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rJMSF032J17+          TTTNTGGCAGATACTGTTTCAGCAGGCCAACTAGGTGAAGAAAATTACCTCCAACAGATG
                      ____________________________________________________________
consensus             TTTNTGGCAGATACTGTTTCAGCAGGCCAACTAGGTGAAGAAAATTACCTCCAACAGATG
 
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rJMSF032J17+          CATTNTGCAATAGAAAAGTTGGAACATTTAATNCGGTTTGTAAACCAGGCGGATAACCTT
                      ____________________________________________________________
consensus             CATTNTGCAATAGAAAAGTTGGAACATTTAATNCGGTTTGTAAACCAGGCGGATAACCTT
 
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rJMSF032J17+          AGGGAATTAACCCTAAACCAGATGTCTCACTTNTTAACAACCCGCCAAGCAGCAAGGGGC
                      ____________________________________________________________
consensus             AGGGAATTAACCCTAAACCAGATGTCTCACTTNTTAACAACCCGCCAAGCAGCAAGGGGC
 
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rJMSF032J17+          CTTCTNGCCTTGGGGGAGTACCTTCAACGACTGCGCACTNTGAGCTCACTTTGGGCAAAC
rJMSF033K02+                                                        CACTNTGGGCAAAC
                      ____________________________________________________________
consensus             CTTCTNGCCTTGGGGGAGTACCTTCAACGACTGCGCACTNTGAGCTCACTTTGGGCAAAC
 
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rJMSF032J17+          CATCCTNGTGAGGNTGNTTAACAATGTGAACCTCAAGAGTCTCCCCNCCTTTCAAACTCA
rJMSF033K02+          CATCCTNGTGAGGCTGCTTAACAATGTGAACCTCAAGAGTCTCCCCNCCTTTCNAACTCA
                      ____________________________________________________________
consensus             CATCCTNGTGAGGCTGCTTAACAATGTGAACCTCAAGAGTCTCCCCNCCTTTCAAACTCA
 
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rJMSF032J17+          ATCAGCTTTACCAGCCTCCCGTGCAAGTNTGGTATGGATATGGATACGGAGCGCAAATNT
rJMSF033K02+          ATCAGNTTTACCAGCCTCCCGTGCAAGTTTGGTATGGATATGGATACGGAGCGCAGATNT
                      ____________________________________________________________
consensus             ATCAGCTTTACCAGCCTCCCGTGCAAGTTTGGTATGGATATGGATACGGAGCGCAGATNT
 
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rJMSF032J17+          CAACTGCTGTCAACTTGGAGGCCNCTTGCCATGATTGCCGATTTGNGAATATGTTGATCT
rJMSF033K02+          CANCTGCTGTCAACTTGGAGGCCNCTNGCCNTGATTGCCGATTTGGGAANNTGTTGATCT
                      ____________________________________________________________
consensus             CAACTGCTGTCAACTTGGAGGCCNCTTGCCATGATTGCCGATTTGGGAATATGTTGATCT
 
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rJMSF032J17+          GTTGTGTCATGGAAGTTTGCAGTTGCAGTTTCCTTTCATATACATATATTTCTTTGCCGG
rJMSF033K02+          GTTGNGTCATGGAAGTTTGCAGTTGCAGTTTCCTTTCATATACATATATTTCTTTGCCGG
                      ____________________________________________________________
consensus             GTTGTGTCATGGAAGTTTGCAGTTGCAGTTTCCTTTCATATACATATATTTCTTTGCCGG
 
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rJMSF032J17+          TAGGNGTAGTCTTGAACNATATATATGAGATATAAAAAAAAAATGCAGTGGTGAAGTTTG
rJMSF033K02+          TAGGCGTAGTNTTGAACAATATATNTGAGATATAAAAAAAAAATGCAGTGGTGAAGTTTG
                      ____________________________________________________________
consensus             TAGGCGTAGTCTTGAACAATATATATGAGATATAAAAAAAAAATGCAGTGGTGAAGTTTG
 
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rJMSF032J17+          GTATTGATAGTGTCAACTGTATATTGCAGCATCTATACTAATGTTAGGGCT         
rJMSF033K02+          GTATTGATAGNGTCAACTGTATATTGCAGCATCTATACTAATGTTAGGGCTATTTTTGGA
                      ____________________________________________________________
consensus             GTATTGATAGTGTCAACTGTATATTGCAGCATCTATACTAATGTTAGGGCTATTTTTGGA
 
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rJMSF033K02+          TGCTTTGGGGTTGAACAGTTGCTCAGNTTAAAGAAAAGAACAAAACAAACNNNAGGCAAA
                      ____________________________________________________________
consensus             TGCTTTGGGGTTGAACAGTTGCTCAGNTTAAAGAAAAGAACAAAACAAACNNNAGGCAAA