Contig 010020:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033E03Sequence679010020 (2)ref|XP_008383363.1|1e-07PREDICTED: PHD finger protein ALFIN-LIKE 4-like isoform X2 [Malus domestica]754010020 (2)ref|NP_001242022.1|7e-41uncharacterized protein LOC100794662 [Glycine max] gb|ACU21475.1| unknown [Glyci

Alignment

This contig is upended


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JMSF033E03-                                                GGTTTATTTCCACTCGTTTAATC
                      ____________________________________________________________
consensus                                                  GGTTTATTTCCACTCGTTTAATC
 
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JMSF033E03-           GTCTCTGCAATCTATACCTTTGTTTTAATTGATGCCTTTGGATTTAGTCAATTCTTTTCG
                      ____________________________________________________________
consensus             GTCTCTGCAATCTATACCTTTGTTTTAATTGATGCCTTTGGATTTAGTCAATTCTTTTCG
 
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JMSF033E03-           CAATTGCCCAGTTGCAGAGGCCTTGCTGCCTTTGTACTTAGATGAAGCTGATTTCAGAAT
                      ____________________________________________________________
consensus             CAATTGCCCAGTTGCAGAGGCCTTGCTGCCTTTGTACTTAGATGAAGCTGATTTCAGAAT
 
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JMSF033E03-           TTCATTCCATAAATTCGTCTATAATGTTTGTTATTTGTGCATTCAGTGCTTGCTGCTCTA
                      ____________________________________________________________
consensus             TTCATTCCATAAATTCGTCTATAATGTTTGTTATTTGTGCATTCAGTGCTTGCTGCTCTA
 
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JMSF033E03-           GATTCAGAGACATCACTTGTCATGTTGAGACCTAGAAATTAGTTTGATATCAAATGTAGG
rJMSF033E03+                                    GAGACCTAGAAATTAGTTTGATATCAAATGTAGG
                      ____________________________________________________________
consensus             GATTCAGAGACATCACTTGTCATGTTGAGACCTAGAAATTAGTTTGATATCAAATGTAGG
 
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JMSF033E03-           AAGGTTATTGCCATTTTATATTCTCATTCCAATTGGGTTCCAAGAGGACAGAAGATTGGT
rJMSF033E03+          AAGGTTATTGCCATTTTATATTCTCATTCCAATTGGGTTCCAAGAGGACAGAAGATTGGT
                      ____________________________________________________________
consensus             AAGGTTATTGCCATTTTATATTCTCATTCCAATTGGGTTCCAAGAGGACAGAAGATTGGT
 
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JMSF033E03-           GTCTAAGATTCATTTTTCTTTTTAGTTGAATAAGTGAATAACTCTCTATCCATTGATGGT
rJMSF033E03+          GTCTAAGATTCATTTTTCTTTTTAGTTGAATAAGTGAATAACTCTCTATCCATTGATGGT
                      ____________________________________________________________
consensus             GTCTAAGATTCATTTTTCTTTTTAGTTGAATAAGTGAATAACTCTCTATCCATTGATGGT
 
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JMSF033E03-           TCTTTATTCAAAAGTTAGTAAGTTAATTTTAGCAGTATTCAAGCATCTTGAAATCATTTT
rJMSF033E03+          TCTTTATTCAAAAGTTAGTAAGTTAATTTTAGCAGTATTCAAGCATCTTGAAATCATTTT
                      ____________________________________________________________
consensus             TCTTTATTCAAAAGTTAGTAAGTTAATTTTAGCAGTATTCAAGCATCTTGAAATCATTTT
 
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JMSF033E03-           ATTGCATGTGCAGGAAGGTTCTGTTCAACATGATAAATGAGCTGCCTACAGTATTTGAGA
rJMSF033E03+          ATTGCATGTGCAGGAAGGTTCTGTTCAACATGATAAATGAGCTGCCTACAGTATTTGAGA
                      ____________________________________________________________
consensus             ATTGCATGTGCAGGAAGGTTCTGTTCAACATGATAAATGAGCTGCCTACAGTATTTGAGA
 
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JMSF033E03-           TTGTGACTGGTGCTGCAAAGAAACATAACGAGAAATCTGTAATCACAAATCATGGTGGCA
rJMSF033E03+          TTGTGACTGGTGCTGCAAAGAAACATAACGAGAAATCTGTAATCACAAATCATGGTGGCA
                      ____________________________________________________________
consensus             TTGTGACTGGTGCTGCAAAGAAACATAACGAGAAATCTGTAATCACAAATCATGGTGGCA
 
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JMSF033E03-           GCAAAATGAAGTCAAGCTCCAAATCGCGACCAGCTGAATCTCATGGAAGGGCGATGAATG
rJMSF033E03+          GCAAAATGAAGTCAAGCTCCAAATCGCGACCAGCTGAATCTCATGGAAGGGCGATGAATG
                      ____________________________________________________________
consensus             GCAAAATGAAGTCAAGCTCCAAATCGCGACCAGCTGAATCTCATGGAAGGGCGATGAATG
 
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JMSF033E03-           TGAACCCCCACTATGAAGAGGAGGAATACTATGATGAAGAGGAGCATGGTAACACC    
rJMSF033E03+          TGAACCCCCACTATGAAGAGGAGGAATACTATGATGAAGAGGAGCATGGTAACACCTTGT
                      ____________________________________________________________
consensus             TGAACCCCCACTATGAAGAGGAGGAATACTATGATGAAGAGGAGCATGGTAACACCTTGT
 
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rJMSF033E03+          GCGGTGCTTGTGGGAAGCACGGTGGATTGGATGAATTCTGGATTGGCTGTGACAAATGCG
                      ____________________________________________________________
consensus             GCGGTGCTTGTGGGAAGCACGGTGGATTGGATGAATTCTGGATTGGCTGTGACAAATGCG
 
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rJMSF033E03+          AAAGGTGGTTCCATGGCAGGTGCGTGAAAGTCACCCCTGCCAAAGCCGAGCACATGAAGC
                      ____________________________________________________________
consensus             AAAGGTGGTTCCATGGCAGGTGCGTGAAAGTCACCCCTGCCAAAGCCGAGCACATGAAGC
 
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rJMSF033E03+          ACTACAAGTGTCCCTCTTGCAGCAGCAAGAGAATCCGTCCCTGAGGTAGAAATATGTTGT
                      ____________________________________________________________
consensus             ACTACAAGTGTCCCTCTTGCAGCAGCAAGAGAATCCGTCCCTGAGGTAGAAATATGTTGT
 
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rJMSF033E03+          GTTACTTAACTCTTGCTGAGAAACAAAACTTTAGGCCGCTGTGCTTATTAACTTTGAACA
                      ____________________________________________________________
consensus             GTTACTTAACTCTTGCTGAGAAACAAAACTTTAGGCCGCTGTGCTTATTAACTTTGAACA
 
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rJMSF033E03+          TCATTTTATTTCTCTAGAATTCGACTCTTCATATCTTTGAATTATATCAGATATTATCTT
                      ____________________________________________________________
consensus             TCATTTTATTTCTCTAGAATTCGACTCTTCATATCTTTGAATTATATCAGATATTATCTT