Contig 010013:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031L19Sequence657010013 (6)ref|XP_004240972.1|6e-98PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Solanum lycoper723010013 (6)ref|XP_009612706.1|2e-111PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Nicotiana tomen
JMSF032L19Sequence613010013 (6)ref|XP_004240972.1|2e-86PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Solanum lycoper567010013 (6)ref|XP_009612706.1|1e-86PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Nicotiana tomen
JMSF051K17Sequence703010013 (6)ref|XP_004240972.1|5e-123PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Solanum lycoper744010013 (6)ref|XP_009612706.1|5e-117PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Nicotiana tomen

Alignment

This contig is upended


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JMSF032L19-                                    GAAGAATCTGTTTTCGACGCATATATGTTTTTCAT
JMSF031L19-                                    GAAGAATCTGTTTTCGACGCATATATGTTTTTCAT
                      ____________________________________________________________
consensus                                      GAAGAATCTGTTTTCGACGCATATATGTTTTTCAT
 
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JMSF032L19-           GCCTGACCAATTCACCATACCGCAAACCCACGGCTAGGAATCTATAAATCTTCGTCTACC
JMSF031L19-           GCCTGACCAATTCACCATACCGCAAACCCACGGCTAGGAATCTATAAATCTTCGTCTACC
JMSF051K17-                                GCAAACCCACGGCTAGGAATCTATAAATCTTCGTCTACC
                      ____________________________________________________________
consensus             GCCTGACCAATTCACCATACCGCAAACCCACGGCTAGGAATCTATAAATCTTCGTCTACC
 
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JMSF032L19-           ATCAAGCATTCAACCTCTCTGCTTTTTCGCTTAATTATTAGCTCCGTTCCGATCGATGGC
JMSF031L19-           ATCAAGCATTCAACCTCTCTGCTTTTTCGCTTAATTATTAGCTCCGTTCCGATCGATGGC
JMSF051K17-           ATCAAGCATTCAACCTCTCTGCTTTTTCGCTTAATTATTAGCTCCGTTCCGATCGATGGC
                      ____________________________________________________________
consensus             ATCAAGCATTCAACCTCTCTGCTTTTTCGCTTAATTATTAGCTCCGTTCCGATCGATGGC
 
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JMSF032L19-           CACCGGAAAAGGTAAAAAGACCGTCTTGAAGTTCGATTCCGAGGATGACGTGGCGGTGGC
JMSF031L19-           CACCGGAAAAGGTAAAAAGACCGTCTTGAAGTTCGATTCCGAGGATGACGTGGCGGTGGC
JMSF051K17-           CACCGGAAAAGGTAAAAAGACCGTCTTGAAGTTCGATTCCGAGGATGACGTGGCGGTGGC
                      ____________________________________________________________
consensus             CACCGGAAAAGGTAAAAAGACCGTCTTGAAGTTCGATTCCGAGGATGACGTGGCGGTGGC
 
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JMSF032L19-           TCTGGCGAAATACACCGCCNATTTATCGGCCAAGTTCGTCGCANAGAAAGGCTCCTTCAC
JMSF031L19-           TCTGGCGAAATACACCGCCGATTTATCGGCCAAGTTCGTCGCACAGAAAGGCTCCTTCAC
JMSF051K17-           TCTGGCGAAATACACCGCCGATTTATCGGCCAAGTTCGTCGCACAGAAAGGCTCCTTCAC
                      ____________________________________________________________
consensus             TCTGGCGAAATACACCGCCGATTTATCGGCCAAGTTCGTCGCACAGAAAGGCTCCTTCAC
 
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JMSF032L19-           TGTTGTCCTCTCCGGAGGTTCCCTCATCGACACCATGAGGAAACTAGTGGAGGCTCCTTA
JMSF031L19-           TGTTGTCCTCTCCGGAGGTTCCCTCATCGACACCATGAGGAAACTAGTGGAGGCTCCTTA
JMSF051K17-           TGTTGTCCTCTCCGGAGGTTCCCTCATCGACACCATGAGGAAACTAGTGGAGGCTCCTTA
rJMSF051K17+                                       ACACCATGAGGAAACTAGTGGAGGCTCCTTA
rJMSF031L19+                                                                   TTA
                      ____________________________________________________________
consensus             TGTTGTCCTCTCCGGAGGTTCCCTCATCGACACCATGAGGAAACTAGTGGAGGCTCCTTA
 
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JMSF032L19-           CAAGGATTCAGTGGATTGGTCGAAATGGTGGATCTTTTGGGTGGATGAGAGGGTGGTTCC
JMSF031L19-           CAAGGATTCAGTGGATTGGTCGAAATGGTGGATCTTTTGGGTGGATGAGAGGGTGGTTCC
JMSF051K17-           CAAGGATTCAGTGGATTGGTCGAAATGGTGGATCTTTTGGGTGGATGAGAGGGTGGTTCC
rJMSF051K17+          CAAGGATTCAGTGGATTGGTCGAAATGGTGGATCTTTTGGGTGGATGAGAGGGTGGTTCC
rJMSF031L19+          CAAGGATTCAGTGGATTGGTCGAAATGGTGGATCTTTTGGGTGGATGAGAGGGTGGTTCC
                      ____________________________________________________________
consensus             CAAGGATTCAGTGGATTGGTCGAAATGGTGGATCTTTTGGGTGGATGAGAGGGTGGTTCC
 
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JMSF032L19-           ACTGGATCACCCGGACAGCAATTATCTTCTTGCCTGGAATGGTTTTCTTTCAAAGGTACC
JMSF031L19-           ACTGGATCACCCGGACAGCAATTATCTTCTTGCCTGGAATGGTTTTCTTTCAAAGGTACC
JMSF051K17-           ACTGGATCACCCGGACAGCAATTATCTTCTTGCCTGGAATGGTTTTCTTTCAAAGGTACC
rJMSF032L19+                                           CTGGAATGGTTTTCTNTCAAAGGTACC
rJMSF051K17+          ACTGGATCACCCGGACAGCAATTATCTTCTTGCCTGGAATGGTTTTCTTTCAAAGGTACC
rJMSF031L19+          ACTGGATCACCCGGACAGCAATTATCTTCTTGCCTGGAATGGTTTTCTTTCAAAGGTACC
                      ____________________________________________________________
consensus             ACTGGATCACCCGGACAGCAATTATCTTCTTGCCTGGAATGGTTTTCTTTCAAAGGTACC
 
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JMSF032L19-           GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
JMSF031L19-           GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
JMSF051K17-           GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
rJMSF032L19+          GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
rJMSF051K17+          GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
rJMSF031L19+          GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
                      ____________________________________________________________
consensus             GATTCCCTCGACTAACATTTATGCAATCAATGACAAGAAGTCCCCAGAAGGTGCAGCTGA
 
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JMSF032L19-           TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
JMSF031L19-           TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
JMSF051K17-           TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
rJMSF032L19+          TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
rJMSF051K17+          TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
rJMSF031L19+          TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
                      ____________________________________________________________
consensus             TGATTACGAGGCTCGCCTCAAGCAGCTGGTTGAGTCCAAGGTTCTACCTCTATCTGCTAC
 
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JMSF032L19-           TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGG                      
JMSF031L19-           TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGGGGCCCGATGGGCATCTGGCTTC
JMSF051K17-           TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGGGGCCCGATGGGCATCTGGCTTC
rJMSF032L19+          TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGGGGCCCGATGGGCATCTGGCTTC
rJMSF051K17+          TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGGGGCCCGATGGGCATCTGGCTTC
rJMSF031L19+          TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGGGGCCCGATGGGCATCTGGCTTC
                      ____________________________________________________________
consensus             TGGATTCCCCAAGTTTGATCTGATGCTGCTAGGTATGGGGCCCGATGGGCATCTGGCTTC
 
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JMSF031L19-           TCTATTCCCAAATCGTCCTCAC                                      
JMSF051K17-           TCTATTCCCAAATCGTCCTCACCGCCACGAGAAGGAGAGATGGGTAACTTTCATTACAGA
rJMSF032L19+          TCTATTCCCAAATCGTCCTCACCGCCACGAGAAGGAGAGATGGGTAACTTTCATTACAGA
rJMSF051K17+          TCTATTCCCAAATCGTCCTCACCGCCACGAGAAGGAGAGATGGGTAACTTTCATTACAGA
rJMSF031L19+          TCTATTCCCAAATCGTCCTCACCGCCACGAGAAGGAGAGATGGGTAACTTTCATTACAGA
                      ____________________________________________________________
consensus             TCTATTCCCAAATCGTCCTCACCGCCACGAGAAGGAGAGATGGGTAACTTTCATTACAGA
 
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JMSF051K17-           TTCACCAAAACCGCCTCCCCCAAGGATCACTTTCACATTTCCAGTGATCAACGCTGCTTC
rJMSF032L19+          TTCACCAAAACCGCCTCCCCCAAGGATCACTTTCACATTTCCAGTGATCAACGCTGCTTC
rJMSF051K17+          TTCACCAAAACCGCCTCCCCCAAGGATCACTTTCACATTTCCAGTGATCAACGCTGCTTC
rJMSF031L19+          TTCACCAAAACCGCCTCCCCCAAGGATCACTTTCACATTTCCAGTGATCAACGCTGCTTC
                      ____________________________________________________________
consensus             TTCACCAAAACCGCCTCCCCCAAGGATCACTTTCACATTTCCAGTGATCAACGCTGCTTC
 
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JMSF051K17-           A                                                           
rJMSF032L19+          AGAGAACGCCATGGTGCTCACCGGTGCTGAGTTAGCCTACATGGTGAATATTGCTTTGGG
rJMSF051K17+          AGAGAACGCCATGGTGCTCACCGGTGCTGAGTTAGCCTACATGGTGAATATTGCTTTGGG
rJMSF031L19+          AGAGAACGCCATGGTGCTCACCGGTGCTGAGTTAGCCTACATGGTGAATATTGCTTTGGG
                      ____________________________________________________________
consensus             AGAGAACGCCATGGTGCTCACCGGTGCTGAGTTAGCCTACATGGTGAATATTGCTTTGGG
 
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rJMSF032L19+          TAACGGGGTGGCTTCTGATGGGATACCCCCGCCAATTACTGACCTTTCGGCTGAGGATGA
rJMSF051K17+          TAACGGGGTGGCTTCTGATGGGATACCCCCGCCAATTACTGACCTTTCGGCTGAGGATGA
rJMSF031L19+          TAACGGGGTGGCTTCTGATGGGATACCCCCGCCAATTACTGACCTTTCGGCTGAGGATGA
                      ____________________________________________________________
consensus             TAACGGGGTGGCTTCTGATGGGATACCCCCGCCAATTACTGACCTTTCGGCTGAGGATGA
 
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rJMSF032L19+          GCTGACCTTTTTCTTGGACAAGGATGCATCTTNTAAACTGTGAAGCCATGGACAAATAGT
rJMSF051K17+          GCTGACCTTTTTCTTGGACAAGGATGCATCTTCTAAACTGTGAAGCCATGGACAAATAGT
rJMSF031L19+          GCTGACCTTTTTCTTGGACAAGGATGCATCTTCTAAACTGTGAAGCCATGGACAAATAGT
                      ____________________________________________________________
consensus             GCTGACCTTTTTCTTGGACAAGGATGCATCTTCTAAACTGTGAAGCCATGGACAAATAGT
 
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rJMSF032L19+          AACTGCAAGCACCACTTTAATAACTAGTTCCCTCATTATCATTTCATCAATGGTGCCA  
rJMSF051K17+          AACTGCAAGCACCACTTTAATAACTAGTTCCCTCATTATCATTTCATCAATGGTGCCATT
rJMSF031L19+          AACTGCAAGCACCACTTTAATAACTAGTTCCCTCATTATCATTTCATCAATGGTGCCATT
                      ____________________________________________________________
consensus             AACTGCAAGCACCACTTTAATAACTAGTTCCCTCATTATCATTTCATCAATGGTGCCATT
 
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rJMSF051K17+          TTAATTACTTCCCTTGTTGTGCTGTCTGTGTACTCCATTCCTTGTATCTT          
rJMSF031L19+          TTAATTACTTCCCTTGTTGTGCTGTCTGTGTACTCCATTCCTTGTATCTTTGTTATAATG
                      ____________________________________________________________
consensus             TTAATTACTTCCCTTGTTGTGCTGTCTGTGTACTCCATTCCTTGTATCTTTGTTATAATG