Contig 010012:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005D17Sequence289011894 (7)emb|CDX92861.1|5e-43BnaC07g41190D [Brassica napus]101010012 (2)
JMSF031G18Sequence634001896 (8)ref|XP_011080456.1|3e-115PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Sesamum indicum]579010012 (2)ref|XP_006443086.1|1e-29hypothetical protein CICLE_v10018576mg [Citrus clementina] gb|ESR56326.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF031G18+ GATAGATGCAGCTGGAGATGGNGACGTGTTGGTGGTATT
                      ____________________________________________________________
consensus GATAGATGCAGCTGGAGATGGNGACGTGTTGGTGGTATT
 
. : . : . : . : . : . :
rJMSF031G18+ GGATTTGGTGATAGATGAGTCACAACTCAAGACTGGAGCTGCTCGTGAGATTGTTAANAG
                      ____________________________________________________________
consensus GGATTTGGTGATAGATGAGTCACAACTCAAGACTGGAGCTGCTCGTGAGATTGTTAANAG
 
. : . : . : . : . : . :
rJMSF031G18+ AGTTCAGAAGTTGAAAAAGAAATCTGCACTTGAGCCAACAGATGTAGTTCAGGTCTACTT
                      ____________________________________________________________
consensus AGTTCAGAAGTTGAAAAAGAAATCTGCACTTGAGCCAACAGATGTAGTTCAGGTCTACTT
 
. : . : . : . : . : . :
rJMSF031G18+ CAGACCTCTAGACGAGGATAAATCAGTTTCGCAGCAGGTTTTGGAGACACAGAAAGAATA
                      ____________________________________________________________
consensus CAGACCTCTAGACGAGGATAAATCAGTTTCGCAGCAGGTTTTGGAGACACAGAAAGAATA
 
. : . : . : . : . : . :
rJMSF031G18+ CATTACTGATGCCATTGGATCTCCANTGCTTCCTGCTGACTCGATTCCACCAAGTGCTGT
                      ____________________________________________________________
consensus CATTACTGATGCCATTGGATCTCCANTGCTTCCTGCTGACTCGATTCCACCAAGTGCTGT
 
. : . : . : . : . : . :
rJMSF031G18+ GATTCTCGGAGAAGAGAGTTTCGATGGAGTGTCAGACCTCAAACTCCTCGTTCACAATCA
                      ____________________________________________________________
consensus GATTCTCGGAGAAGAGAGTTTCGATGGAGTGTCAGACCTCAAACTCCTCGTTCACAATCA
 
. : . : . : . : . : . :
rJMSF031G18+ CCTTAGCAAGAGCTCAGAAAATCCTAGTGTTTCGTTGTTTCTGTATTNTGGGTTCTGGTG
                      ____________________________________________________________
consensus CCTTAGCAAGAGCTCAGAAAATCCTAGTGTTTCGTTGTTTCTGTATTNTGGGTTCTGGTG
 
. : . : . : . : . : . :
rJMSF031G18+ CAAGGTCAGGTCATCAAGTTTGTNTTTAGTNTTTTGGTTGGTTTTTCAAAAAATNACCTA
                      ____________________________________________________________
consensus CAAGGTCAGGTCATCAAGTTTGTNTTTAGTNTTTTGGTTGGTTTTTCAAAAAATNACCTA
 
. : . : . : . : . : . :
rJMSF005D17+ GGTGTTTATGACACATTTTATCAAAGATAGGTTTTG
rJMSF031G18+ TCTGAGGATCGTGTGNNGGGTGGGGGTGTTTATGACACATTTTATCAAAGATAGGTTTTG
                      ____________________________________________________________
consensus TCTGAGGATCGTGTGNNGGGTGGGGGTGTTTATGACACATTTTATCAAAGATAGGTTTTG
 
. : . : . : . : . : . :
rJMSF005D17+ GGTTTAATGTTTAGAACATACACACTTCTCAGAACAGATCAAAATT
rJMSF031G18+ GGTTTAATGTTTAGAACATACACACTTCTCAGAACAGATCAAAATTTGTAACAAAAATAT
                      ____________________________________________________________
consensus GGTTTAATGTTTAGAACATACACACTTCTCAGAACAGATCAAAATTTGTAACAAAAATAT