Contig 010010:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031D04Sequence611003595 (5)ref|XP_009612912.1|1e-97PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian732010010 (2)ref|XP_006369613.1|2e-86hypothetical protein POPTR_0001s269802g [Populus trichocarpa] gb|ERP66182.1| hyp
JMSF032H09Sequence674003595 (5)ref|XP_009612912.1|6e-111PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian687010010 (2)ref|XP_006369613.1|6e-100hypothetical protein POPTR_0001s269802g [Populus trichocarpa] gb|ERP66182.1| hyp

Alignment

This contig is upended


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rJMSF031D04+                                                         AGGAAGTTGGCNT
                      ____________________________________________________________
consensus                                                            AGGAAGTTGGCNT
 
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rJMSF032H09+                TGAGAGACCTTGTCTCTCAGATAAATGACACTTTCAGTCGTAATTTTAGAGAAA
rJMSF031D04+          CCAACATGAGAGACCTTGTCTCTCAGATAAATGACACTTTCAGTCGTAATTTTAGAGAAA
                      ____________________________________________________________
consensus             CCAACATGAGAGACCTTGTCTCTCAGATAAATGACACTTTCAGTCGTAATTTTAGAGAAA
 
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rJMSF032H09+          TGGCTGTTGCAGGAGAGGTTTCATTGGATGAGCACGATATGGACTTTGATAAATATGGGA
rJMSF031D04+          TGGCTG-TGCAGGAGAGGTTTCATTGGATGAGCACGATATGGACTTTGATAAATATGGGA
                      ____________________________________________________________
consensus             TGGCTGTTGCAGGAGAGGTTTCATTGGATGAGCACGATATGGACTTTGATAAATATGGGA
 
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rJMSF032H09+          TTCTAATTAGAGTTCAATTCAGGGAAACAGGACAACTTCAAATTCTTAGTGCCCACCACC
rJMSF031D04+          TTCTAATTAGAGTTCAATTCAGGGAAACAGGACAACTTCAAATTCTTAGTGCCCACCACC
                      ____________________________________________________________
consensus             TTCTAATTAGAGTTCAATTCAGGGAAACAGGACAACTTCAAATTCTTAGTGCCCACCACC
 
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rJMSF032H09+          AATCTGGAGGCGAGCGCTCTGTTTCAACTATTCTTTACCTTGTTTCTCTTCAAGACCTAA
rJMSF031D04+          AATCTGGAGGCGAGCGCTCTGTTTCAACTATTCTTTACCTTGTTTCTCTTCAAGACCTAA
                      ____________________________________________________________
consensus             AATCTGGAGGCGAGCGCTCTGTTTCAACTATTCTTTACCTTGTTTCTCTTCAAGACCTAA
 
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rJMSF032H09+          CCACTTGCCCTTTTAGAGTGGTTGATGAAATAAATCAAGGAATGGATCCAGTTAATGAAA
rJMSF031D04+          CCACTTGCCCTTTTAGAGTGGTTGATGAAATAAATCAAGGAATGGATCCAGTTAATGAAA
                      ____________________________________________________________
consensus             CCACTTGCCCTTTTAGAGTGGTTGATGAAATAAATCAAGGAATGGATCCAGTTAATGAAA
 
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rJMSF032H09+          GGAAAATGTTTCAGCAATTAGTCAGAGCAGCCAGCCAACGTAATACACCACAGTGTTTCC
rJMSF031D04+          GGAAAATGTTTCAGCAATTAGTCAGAGCAGCCAGCCAACGTAATACACCACAGTGTTTCC
                      ____________________________________________________________
consensus             GGAAAATGTTTCAGCAATTAGTCAGAGCAGCCAGCCAACGTAATACACCACAGTGTTTCC
 
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rJMSF032H09+          TACTTACCCCAAAACTCTTGCCGAATCTTGACTATAGCGATGCATGCAGTGTTCTCACTG
rJMSF031D04+          TACTTACCCCAAAACTCTTGCCGAATCTTGACTATAGCGATGCATGCAGTGTTCTCACTG
                      ____________________________________________________________
consensus             TACTTACCCCAAAACTCTTGCCGAATCTTGACTATAGCGATGCATGCAGTGTTCTCACTG
 
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rJMSF032H09+          TAATGAACGGGCCATGGATTGAGCAGGCTTCCAAAGCCTGGATCAATGGAGAAAGCTGGA
rJMSF031D04+          TAATGAACGGGCCATGGATTGAGCAGGCTTCCAAAGCCTGGATCAATGGAGAAAGCTGGA
                      ____________________________________________________________
consensus             TAATGAACGGGCCATGGATTGAGCAGGCTTCCAAAGCCTGGATCAATGGAGAAAGCTGGA
 
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rJMSF032H09+          GATCAGTGACGAGGAGGGCATCAGAAGAGAGGTGTCACTAGGAAATGTAAATCATGCATG
rJMSF031D04+          GATCAGTGACGAGGAGGGCATCAGAAGAGAGGTGTCACTAGGAAATGTAAATCATGCATG
                      ____________________________________________________________
consensus             GATCAGTGACGAGGAGGGCATCAGAAGAGAGGTGTCACTAGGAAATGTAAATCATGCATG
 
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rJMSF032H09+          GAGATTGCACCATATGCTTGCTGTTTTTGAGAGCTCCAGTAGTAGCTGATTACTTGAATC
rJMSF031D04+          GAGATTGCACCATATGCTTGCTGTTTTTGAGAGCTCCAGTAGTAGCTGATTACTTGAATC
                      ____________________________________________________________
consensus             GAGATTGCACCATATGCTTGCTGTTTTTGAGAGCTCCAGTAGTAGCTGATTACTTGAATC
 
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rJMSF032H09+          TGTTGTATATGTGTGTTTTGCTGATAACCTGAATCTAGAAATCATTCTGCCCTTCAACAT
rJMSF031D04+          TGTTGTATATGTGTGTTTTGCTGATAACCTGAATCTAGAAATCATTCTGCCCTTCAACAT
                      ____________________________________________________________
consensus             TGTTGTATATGTGTGTTTTGCTGATAACCTGAATCTAGAAATCATTCTGCCCTTCAACAT
 
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rJMSF032H09+          TTCTGAAGTTTCAAACATCAAGTTCTAGTAGT                            
rJMSF031D04+          TTCTGAAGTTTCAAACATCAAGTTCTTGTAGTAAGCTGTAATAGGCTGTATATTGATATC
                      ____________________________________________________________
consensus             TTCTGAAGTTTCAAACATCAAGTTCTTGTAGTAAGCTGTAATAGGCTGTATATTGATATC