Contig 010009:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027J18Sequence520012899 (3)ref|XP_009630854.1|7e-29PREDICTED: ran-binding protein 10 isoform X2 [Nicotiana tomentosiformis]576010009 (3)ref|XP_009769202.1|4e-38PREDICTED: ran-binding protein 10 [Nicotiana sylvestris]
JMSF031B02Sequence621012899 (3)ref|XP_009630854.1|7e-68PREDICTED: ran-binding protein 10 isoform X2 [Nicotiana tomentosiformis]676010009 (3)ref|XP_009769202.1|1e-51PREDICTED: ran-binding protein 10 [Nicotiana sylvestris]
JMSF032F01Sequence696012899 (3)ref|XP_009630854.1|4e-69PREDICTED: ran-binding protein 10 isoform X2 [Nicotiana tomentosiformis]704010009 (3)ref|XP_009769202.1|3e-60PREDICTED: ran-binding protein 10 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF032F01+          GCTTCAGTGCCAAAAGTTTATTGAGTTAGCACGGGTTGGGAAGCTTGAAGAGGCAGTGAA
rJMSF031B02+                                                      TTGAAGAGGCAGTGAA
                      ____________________________________________________________
consensus             GCTTCAGTGCCAAAAGTTTATTGAGTTAGCACGGGTTGGGAAGCTTGAAGAGGCAGTGAA
 
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rJMSF032F01+          TCATGGTAGGAGTGAATTTCACAAATTTAATAGGTTTACAGAATTCGAAGACTTAGTTAA
rJMSF031B02+          TCATGGTAGAAGTGAATTTCACAAATTTAATAGGTTTACAGAATTCGAAGACTTAGTTAA
                      ____________________________________________________________
consensus             TCATGGTAGGAGTGAATTTCACAAATTTAATAGGTTTACAGAATTCGAAGACTTAGTTAA
 
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rJMSF032F01+          GGATTGCGCTACTCTGCTGGCATATGAGCAACCACTAAAGTGCTCGGTTGGATATCTCCT
rJMFF027J18+                        TGCTGGCATATGAGCAACCACTAAAGTGCTCGGTTGGATATCTCCT
rJMSF031B02+          GGATTGCGCTACTCTGCTGGCATATGAGCAACCACTAAAGTGCTCGGTTGGATATCTCCT
                      ____________________________________________________________
consensus             GGATTGCGCTACTCTGCTGGCATATGAGCAACCACTAAAGTGCTCGGTTGGATATCTCCT
 
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rJMSF032F01+          AGGAGACTCTCAGCGAGAGATTGTGGCAGATGCAGTAAACGCAGTGATCTTATCGCAAAA
rJMFF027J18+          AGGAGACTCTCAGCGAGAGATTGTGGCAGATGCAGTAAACGCAGTGATCTTATCGCAAAA
rJMSF031B02+          AGGAGACTCTCAGCGAGAGATTGTGGCAGATGCAGTAAACGCAGTGATCTTATCGCAAAA
                      ____________________________________________________________
consensus             AGGAGACTCTCAGCGAGAGATTGTGGCAGATGCAGTAAACGCAGTGATCTTATCGCAAAA
 
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rJMSF032F01+          CCCTAATGTAAAAGACGCGAGTGATTGCTTGCATTCTTGTCTCGAGAGGCTGCTCAGGCA
rJMFF027J18+          CCCTAATGTAAAAGACGCGAGTGATTGCTTGCATTCTTGTCTCGAGAGGCTGCTCAGGCA
rJMSF031B02+          CCCTAATGTAAAAGACGCGAGTGATTGCTTGCATTCTTGTCTCGAGAGGCTGCTCAGGCA
                      ____________________________________________________________
consensus             CCCTAATGTAAAAGACGCGAGTGATTGCTTGCATTCTTGTCTCGAGAGGCTGCTCAGGCA
 
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rJMSF032F01+          ACTCACGGCTTGCTTCCTGGAGAGGAGGGCGTTAAATGGGGATCAAGGCGAGGCCTTCCG
rJMFF027J18+          ACTCACGGCTTGCTTCCTGGAGAGGAGGGCGTTAAATGGGGATCAAGGCGAGGCCTTCCG
rJMSF031B02+          ACTCACGGCTTGCTTCCTGGAGAGGAGGGCGTTAAATGGGGATCAAGGCGAGGCCTTCCG
                      ____________________________________________________________
consensus             ACTCACGGCTTGCTTCCTGGAGAGGAGGGCGTTAAATGGGGATCAAGGCGAGGCCTTCCG
 
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rJMSF032F01+          TCTACGCAGCATACTTTACAGTGGTAAGAAGGGTTAGCGTTTGGTGAGATCATCATCCGT
rJMFF027J18+          TCTACGCAGCATACTTTACAGTGGTAAGAAGGGTTAGCGTTTGGTGAGATCATCATCCGT
rJMSF031B02+          TCTACGCAGCATACTTTACAGTGGTAAGAAGGGTTAGCGTTTGGTGAGATCATCATCCGT
                      ____________________________________________________________
consensus             TCTACGCAGCATACTTTACAGTGGTAAGAAGGGTTAGCGTTTGGTGAGATCATCATCCGT
 
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rJMSF032F01+          ATCCACCCAACCAACCATGTAAGTCACTAGTACAGCAAAGATTGTTCGCGGGGTGACTTT
rJMFF027J18+          ATCCACCCAACCAACCATGTAAGTCACTAGTACAGCAAAGATTGTTCGCGGGGTGACTTT
rJMSF031B02+          ATCCACCCAACCAACCATGTAAGTCACTAGTACAGCAAAGATTGTTCGCGGGGTGACTTT
                      ____________________________________________________________
consensus             ATCCACCCAACCAACCATGTAAGTCACTAGTACAGCAAAGATTGTTCGCGGGGTGACTTT
 
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rJMSF032F01+          CTGTGTAAAATAATCGATTCATTTTCTTCTCCAAAAACTAGGCTTTGTTTGTTCTGTTGG
rJMFF027J18+          CTGTGTAAAATAATCGATTCATTTTCTTCTCCAAAAACTAGGCTTTGTTTGTTCTGTTGG
rJMSF031B02+          CTGTGTAAAATAATCGATTCATTTTCTTCTCCAAAAACTAGGCTTTGTTTGTTCTGTTGG
                      ____________________________________________________________
consensus             CTGTGTAAAATAATCGATTCATTTTCTTCTCCAAAAACTAGGCTTTGTTTGTTCTGTTGG
 
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rJMSF032F01+          CAACTTGGCATTAGTCTCTCCACCACCCCCCACCCCAAACTTCCCAACAACCCCACAAAA
rJMFF027J18+          CAACTTGGCATTAGTCTCTCCACCACCCCCCACCCCAAACTTCCCAACAACCCCACAAAA
rJMSF031B02+          CAACTTGGCATTAGTCTCTCCACCACCCCCCACCCCAAACTTCCCAACAACCCCACAAAA
                      ____________________________________________________________
consensus             CAACTTGGCATTAGTCTCTCCACCACCCCCCACCCCAAACTTCCCAACAACCCCACAAAA
 
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rJMSF032F01+          GCGTCGAATCTTGGTTGGTACTTAGTTCTAGATGTAATCCAGGATTTCATGATCAGGGTT
rJMFF027J18+          GCGTCGAATCTTGGTTGGTACTTAGTTCTAGATGTAATCCAGGATTTCATGATCAGGGTT
rJMSF031B02+          GCGTCGAATCTTGGTTGGTACTTAGTTCTAGATGTAATCCAGGATTTCATGATCAGGGTT
                      ____________________________________________________________
consensus             GCGTCGAATCTTGGTTGGTACTTAGTTCTAGATGTAATCCAGGATTTCATGATCAGGGTT
 
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rJMSF032F01+          GAAGTTGTACAGGTTCCTTTTTTCGTATTTATTGCTAAAAA                   
rJMFF027J18+          GAAGTTGTACAGGTTCCTTTTTTCGTATTTATTGCTAAAAA                   
rJMSF031B02+          GAAGTTGTACAGGTTCCTTTTTTCGTATTTATTGCTAAAAAATTGTAACCTTTGATACTC
                      ____________________________________________________________
consensus             GAAGTTGTACAGGTTCCTTTTTTCGTATTTATTGCTAAAAAATTGTAACCTTTGATACTC