Contig 010005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030F16Sequence689003852 (5)ref|NP_001289533.1|2e-76DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris] sp|P69242.1|773010005 (2)ref|XP_009792610.1|3e-48PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like [Nicotiana sylves
JMSF043I23Sequence730003852 (5)ref|XP_004242994.1|6e-45PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum lycopersicum]717010005 (2)gb|KCW81138.1|5e-37hypothetical protein EUGRSUZ_C02511 [Eucalyptus grandis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+                                              CAGGGATGCAGGATTACATTTTNG
rJMSF030F16+                TTCACACATGATGTTGACTGCCATTGCTTGCAGGGATGCAGGATTACATTTT-G
                      ____________________________________________________________
consensus                   TTCACACATGATGTTGACTGCCATTGCTTGCAGGGATGCAGGATTACATTTTNG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          CAGGAGTGCATGATTCCTTTTGGACACATGCTTGTGACGTTGACCAGATGAATTGTATAC
rJMSF030F16+          CAGGAGTGCATGATTCCTTTTGGACACATGCTTGTGACGTTGACCAGATGAATTGTATAC
                      ____________________________________________________________
consensus             CAGGAGTGCATGATTCCTTTTGGACACATGCTTGTGACGTTGACCAGATGAATTGTATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          TAAGAGAGAAGTTCGTGGAGTTATACGATGTGCCGATTCTTGAAAATCTGCTTGAAAGCT
rJMSF030F16+          TAAGAGAGAAGTTCGTGGAGTTATACGATGTGCCGATTCTTGAAAATCTGCTTGAAAGCT
                      ____________________________________________________________
consensus             TAAGAGAGAAGTTCGTGGAGTTATACGATGTGCCGATTCTTGAAAATCTGCTTGAAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          TCCAGGCATCATTTCCAGCATTGACTTTCCCCCCTCTACCAGAACGAGGCAATTTTGATA
rJMSF030F16+          TCCAGGCATCATTTCCAGCATTGACTTTCCCCCCTCTACCAGAACGAGGCAATTTTGATA
                      ____________________________________________________________
consensus             TCCAGGCATCATTTCCAGCATTGACTTTCCCCCCTCTACCAGAACGAGGCAATTTTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          TGCGAGAAGTTCTCAAGTCTCCCTATTTCTTCAACTGAACCGCCGCCATTCACCATCATT
rJMSF030F16+          TGCGAGAAGTTCTCAAGTCTCCCTATTTCTTCAACTGAACCGCCGCCATTCACCATCATT
                      ____________________________________________________________
consensus             TGCGAGAAGTTCTCAAGTCTCCCTATTTCTTCAACTGAACCGCCGCCATTCACCATCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          GCTGAAAGCCCTTCTGCAAATAGCAGCAGCTATTTCTTCTCAGACATGAATAGGCACAAG
rJMSF030F16+          GCTGAAAGCCCTTCTGCAAATAGCAGCAGCTATTTCTTCTCAGACATGAATAGGCACAAG
                      ____________________________________________________________
consensus             GCTGAAAGCCCTTCTGCAAATAGCAGCAGCTATTTCTTCTCAGACATGAATAGGCACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          TCACATAGAAGAATTGTTGGCTCTTCGCCCATGCACGAGCTCAAATTTCTCTCGGTATGA
rJMSF030F16+          TCACATAGAAGAATTGTTGGCTCTTCGCCCATGCACGAGCTCAAATTTCTCTCGGTATGA
                      ____________________________________________________________
consensus             TCACATAGAAGAATTGTTGGCTCTTCGCCCATGCACGAGCTCAAATTTCTCTCGGTATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          AGATCATGCTCTTTCTTGCATAGTCTTGTCACTCGGGTGTCTCTCTGCAAAACAAAGTTA
rJMSF030F16+          AGATCATGCTCTTTCTTGCATAGTCTTGTCACTCGGGTGTCTCTCTGCAAAACAAAGTTA
                      ____________________________________________________________
consensus             AGATCATGCTCTTTCTTGCATAGTCTTGTCACTCGGGTGTCTCTCTGCAAAACAAAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          GCGCGGCAAAATTCTTGCTCCACCACACATGAGATCTGTAACATAAATATTGGCATCCCA
rJMSF030F16+          GCGCGGCAAAATTCTTGCTCCACCACACATGAGATCTGTAACATAAATATTGGCATCCCA
                      ____________________________________________________________
consensus             GCGCGGCAAAATTCTTGCTCCACCACACATGAGATCTGTAACATAAATATTGGCATCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          GCTTCTCTATTACAGAAACAGATGGGAAAAGAAGCACAGTAGTACACTGCAGTTCTGCTT
rJMSF030F16+          GCTTCTCTATTACAGAAACAGATGGGAAAAGAAGCACAGTAGTACACTGCAGTTCTGCTT
                      ____________________________________________________________
consensus             GCTTCTCTATTACAGAAACAGATGGGAAAAGAAGCACAGTAGTACACTGCAGTTCTGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          CTGGAGCCACCATTAAATTTAGATTATTGCTAGAAATATTTCTTTTAGATGCTCTAAAGA
rJMSF030F16+          CTGGAGCCACCATTAAATTTAGATTATTGCTAGAAATATTTCTTTTAGATGCTCTAAAGA
                      ____________________________________________________________
consensus             CTGGAGCCACCATTAAATTTAGATTATTGCTAGAAATATTTCTTTTAGATGCTCTAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          CTAAAGGTACCTCTTTTGGGAACTCTTTAGGTGATGAATGTAACAATAGGGGTAGAAAAT
rJMSF030F16+          CTAAAGGTACCTCTTTTGGGAACTCTTTAGGTGATGAATGTAACAATAGGGGTAGAAAAT
                      ____________________________________________________________
consensus             CTAAAGGTACCTCTTTTGGGAACTCTTTAGGTGATGAATGTAACAATAGGGGTAGAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043I23+          ACTTTCTTCCTGAGTGCTGTAAAAATTTGAATA                           
rJMSF030F16+          ACTTTCTTCCTGAGTGCTGTAAAAATTTGAATACCAGGCTGAACCCTTGTATATGAAAAT
                      ____________________________________________________________
consensus             ACTTTCTTCCTGAGTGCTGTAAAAATTTGAATACCAGGCTGAACCCTTGTATATGAAAAT