Contig 010003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030B09Sequence673010003 (2)ref|XP_009785157.1|1e-121PREDICTED: PITH domain-containing protein 1 [Nicotiana sylvestris]698010003 (2)ref|XP_009785157.1|1e-79PREDICTED: PITH domain-containing protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF030B09- GGATTCGTTTCTT
                      ____________________________________________________________
consensus GGATTCGTTTCTT
 
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JMSF030B09- GTATTGAGAGGCAAAAGGCAATACAGAGAGGGAGACAGAGCGAAGATGGCTTGCCTTCAC
                      ____________________________________________________________
consensus GTATTGAGAGGCAAAAGGCAATACAGAGAGGGAGACAGAGCGAAGATGGCTTGCCTTCAC
 
. : . : . : . : . : . :
JMSF030B09- GATCACGACTGCGGAGATCACGACTGTTCTTCCAGTTGGTCTCTCTACAAACACATTGAC
                      ____________________________________________________________
consensus GATCACGACTGCGGAGATCACGACTGTTCTTCCAGTTGGTCTCTCTACAAACACATTGAC
 
. : . : . : . : . : . :
JMSF030B09- CTCTCCAAGGTTACTGCTCTGAATGAGGCTGTCATAGGCAGTGTAAAGTCTATTTTTAAA
                      ____________________________________________________________
consensus CTCTCCAAGGTTACTGCTCTGAATGAGGCTGTCATAGGCAGTGTAAAGTCTATTTTTAAA
 
. : . : . : . : . : . :
JMSF030B09- CCATGGGAACAGCGTCTTAATTCATCAGAGGGTTACTTGGAGAGCAATGAGGGTGATCCT
                      ____________________________________________________________
consensus CCATGGGAACAGCGTCTTAATTCATCAGAGGGTTACTTGGAGAGCAATGAGGGTGATCCT
 
. : . : . : . : . : . :
JMSF030B09- GAATTGATTGTCTTCATCCCATTTACTTCGGATGTTAAAATCAAGAGCATTGCAATTGTT
rJMSF030B09+ TTACTTCGGATGTTAAAATCAAGAGCATTGCAATTGTT
                      ____________________________________________________________
consensus GAATTGATTGTCTTCATCCCATTTACTTCGGATGTTAAAATCAAGAGCATTGCAATTGTT
 
. : . : . : . : . : . :
JMSF030B09- GGTGGTTCTGATGGAACAAGTCCTTCCAAGATGAGAGTGTTTATTAATAGAGATGGTATA
rJMSF030B09+ GGTGGTTCTGATGGAACAAGTCCTTCCAAGATGAGAGTGTTTATTAATAGAGATGGTATA
                      ____________________________________________________________
consensus GGTGGTTCTGATGGAACAAGTCCTTCCAAGATGAGAGTGTTTATTAATAGAGATGGTATA
 
. : . : . : . : . : . :
JMSF030B09- GACTTTTCAGATGCTCAAAATATGCAACCAGTTCAGGAATGGGATTTGGCTGAAAATTTG
rJMSF030B09+ GACTTTTCAGATGCTCAAAATATGCAACCAGTTCAGGAATGGGATTTGGCTGAAAATTTG
                      ____________________________________________________________
consensus GACTTTTCAGATGCTCAAAATATGCAACCAGTTCAGGAATGGGATTTGGCTGAAAATTTG
 
. : . : . : . : . : . :
JMSF030B09- CAAGGTGTCCTAGAGTATCAAACAAGGTACTCCAAGTTTCAAAGTGTTGGGAATATCACC
rJMSF030B09+ CAAGGTGTCCTAGAGTATCAAACAAGGTACTCCAAGTTTCAAAGTGTTGGGAATATCACC
                      ____________________________________________________________
consensus CAAGGTGTCCTAGAGTATCAAACAAGGTACTCCAAGTTTCAAAGTGTTGGGAATATCACC
 
. : . : . : . : . : . :
JMSF030B09- TTGCATTTCCCTGACAGTTTTGGTGCAGATGTTACTCAAATCCATTACATTGGCTTAAAA
rJMSF030B09+ TTGCATTTCCCTGACAGTTTTGGTGCAGATGTTACTCAAATCCATTACATTGGCTTAAAA
                      ____________________________________________________________
consensus TTGCATTTCCCTGACAGTTTTGGTGCAGATGTTACTCAAATCCATTACATTGGCTTAAAA
 
. : . : . : . : . : . :
JMSF030B09- GGAGAAGCCACCCAGATGAAGAGGGATGCTGTTGCAAATATTGTCTACGAGCTTATGCCT
rJMSF030B09+ GGAGAAGCCACCCAGATGAAGAGGGATGCTGTTGCAAATATTGTCTACGAGCTTATGCCT
                      ____________________________________________________________
consensus GGAGAAGCCACCCAGATGAAGAGGGATGCTGTTGCAAATATTGTCTACGAGCTTATGCCT
 
. : . : . : . : . : . :
JMSF030B09- AATCCTTCCGATCACAAAACGCGTGCTGAGCATGGTGGTGGCTTTTCACACGTGGAATAA
rJMSF030B09+ AATCCTTCCGATCACAAAACGCGTGCTGAGCATGGTGGTGGCTTTTCACACGTGGAATAA
                      ____________________________________________________________
consensus AATCCTTCCGATCACAAAACGCGTGCTGAGCATGGTGGTGGCTTTTCACACGTGGAATAA
 
. : . : . : . : . : . :
rJMSF030B09+ TGGTTCTTTCATGAAGAAGGGTCGAGAGAAAAATGGAGAAAGGAAATGGCGTCTTGTATT
                      ____________________________________________________________
consensus TGGTTCTTTCATGAAGAAGGGTCGAGAGAAAAATGGAGAAAGGAAATGGCGTCTTGTATT
 
. : . : . : . : . : . :
rJMSF030B09+ ATCCCACAAGTAGTTATGAGTGGTCCAACGTGTGTACATTTGATGATCGAACACCACTGC
                      ____________________________________________________________
consensus ATCCCACAAGTAGTTATGAGTGGTCCAACGTGTGTACATTTGATGATCGAACACCACTGC
 
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rJMSF030B09+ CCTGAATAACAACATTTAGGAGTCTTGCATGCTAATATATATGGATATGGTTTTAACCTC
                      ____________________________________________________________
consensus CCTGAATAACAACATTTAGGAGTCTTGCATGCTAATATATATGGATATGGTTTTAACCTC
 
. : . : . : . : . : . :
rJMSF030B09+ TATCCTAATGAAGTTTGGAGTTGTCTTCTCATCTGTTCTGATGTGTCAATGTGTGAATAG
                      ____________________________________________________________
consensus TATCCTAATGAAGTTTGGAGTTGTCTTCTCATCTGTTCTGATGTGTCAATGTGTGAATAG
 
. : . : . : . : . : . :
rJMSF030B09+ GACACACAGGAAAAGAATGGGTTCAAANTCACTACGGAGTATCTTTTGAGCCCATAAATA
                      ____________________________________________________________
consensus GACACACAGGAAAAGAATGGGTTCAAANTCACTACGGAGTATCTTTTGAGCCCATAAATA