Contig 010003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030B09Sequence673010003 (2)ref|XP_009785157.1|1e-121PREDICTED: PITH domain-containing protein 1 [Nicotiana sylvestris]698010003 (2)ref|XP_009785157.1|1e-79PREDICTED: PITH domain-containing protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF030B09-                                                          GGATTCGTTTCTT
                      ____________________________________________________________
consensus                                                            GGATTCGTTTCTT
 
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JMSF030B09-           GTATTGAGAGGCAAAAGGCAATACAGAGAGGGAGACAGAGCGAAGATGGCTTGCCTTCAC
                      ____________________________________________________________
consensus             GTATTGAGAGGCAAAAGGCAATACAGAGAGGGAGACAGAGCGAAGATGGCTTGCCTTCAC
 
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JMSF030B09-           GATCACGACTGCGGAGATCACGACTGTTCTTCCAGTTGGTCTCTCTACAAACACATTGAC
                      ____________________________________________________________
consensus             GATCACGACTGCGGAGATCACGACTGTTCTTCCAGTTGGTCTCTCTACAAACACATTGAC
 
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JMSF030B09-           CTCTCCAAGGTTACTGCTCTGAATGAGGCTGTCATAGGCAGTGTAAAGTCTATTTTTAAA
                      ____________________________________________________________
consensus             CTCTCCAAGGTTACTGCTCTGAATGAGGCTGTCATAGGCAGTGTAAAGTCTATTTTTAAA
 
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JMSF030B09-           CCATGGGAACAGCGTCTTAATTCATCAGAGGGTTACTTGGAGAGCAATGAGGGTGATCCT
                      ____________________________________________________________
consensus             CCATGGGAACAGCGTCTTAATTCATCAGAGGGTTACTTGGAGAGCAATGAGGGTGATCCT
 
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JMSF030B09-           GAATTGATTGTCTTCATCCCATTTACTTCGGATGTTAAAATCAAGAGCATTGCAATTGTT
rJMSF030B09+                                TTACTTCGGATGTTAAAATCAAGAGCATTGCAATTGTT
                      ____________________________________________________________
consensus             GAATTGATTGTCTTCATCCCATTTACTTCGGATGTTAAAATCAAGAGCATTGCAATTGTT
 
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JMSF030B09-           GGTGGTTCTGATGGAACAAGTCCTTCCAAGATGAGAGTGTTTATTAATAGAGATGGTATA
rJMSF030B09+          GGTGGTTCTGATGGAACAAGTCCTTCCAAGATGAGAGTGTTTATTAATAGAGATGGTATA
                      ____________________________________________________________
consensus             GGTGGTTCTGATGGAACAAGTCCTTCCAAGATGAGAGTGTTTATTAATAGAGATGGTATA
 
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JMSF030B09-           GACTTTTCAGATGCTCAAAATATGCAACCAGTTCAGGAATGGGATTTGGCTGAAAATTTG
rJMSF030B09+          GACTTTTCAGATGCTCAAAATATGCAACCAGTTCAGGAATGGGATTTGGCTGAAAATTTG
                      ____________________________________________________________
consensus             GACTTTTCAGATGCTCAAAATATGCAACCAGTTCAGGAATGGGATTTGGCTGAAAATTTG
 
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JMSF030B09-           CAAGGTGTCCTAGAGTATCAAACAAGGTACTCCAAGTTTCAAAGTGTTGGGAATATCACC
rJMSF030B09+          CAAGGTGTCCTAGAGTATCAAACAAGGTACTCCAAGTTTCAAAGTGTTGGGAATATCACC
                      ____________________________________________________________
consensus             CAAGGTGTCCTAGAGTATCAAACAAGGTACTCCAAGTTTCAAAGTGTTGGGAATATCACC
 
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JMSF030B09-           TTGCATTTCCCTGACAGTTTTGGTGCAGATGTTACTCAAATCCATTACATTGGCTTAAAA
rJMSF030B09+          TTGCATTTCCCTGACAGTTTTGGTGCAGATGTTACTCAAATCCATTACATTGGCTTAAAA
                      ____________________________________________________________
consensus             TTGCATTTCCCTGACAGTTTTGGTGCAGATGTTACTCAAATCCATTACATTGGCTTAAAA
 
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JMSF030B09-           GGAGAAGCCACCCAGATGAAGAGGGATGCTGTTGCAAATATTGTCTACGAGCTTATGCCT
rJMSF030B09+          GGAGAAGCCACCCAGATGAAGAGGGATGCTGTTGCAAATATTGTCTACGAGCTTATGCCT
                      ____________________________________________________________
consensus             GGAGAAGCCACCCAGATGAAGAGGGATGCTGTTGCAAATATTGTCTACGAGCTTATGCCT
 
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JMSF030B09-           AATCCTTCCGATCACAAAACGCGTGCTGAGCATGGTGGTGGCTTTTCACACGTGGAATAA
rJMSF030B09+          AATCCTTCCGATCACAAAACGCGTGCTGAGCATGGTGGTGGCTTTTCACACGTGGAATAA
                      ____________________________________________________________
consensus             AATCCTTCCGATCACAAAACGCGTGCTGAGCATGGTGGTGGCTTTTCACACGTGGAATAA
 
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rJMSF030B09+          TGGTTCTTTCATGAAGAAGGGTCGAGAGAAAAATGGAGAAAGGAAATGGCGTCTTGTATT
                      ____________________________________________________________
consensus             TGGTTCTTTCATGAAGAAGGGTCGAGAGAAAAATGGAGAAAGGAAATGGCGTCTTGTATT
 
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rJMSF030B09+          ATCCCACAAGTAGTTATGAGTGGTCCAACGTGTGTACATTTGATGATCGAACACCACTGC
                      ____________________________________________________________
consensus             ATCCCACAAGTAGTTATGAGTGGTCCAACGTGTGTACATTTGATGATCGAACACCACTGC
 
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rJMSF030B09+          CCTGAATAACAACATTTAGGAGTCTTGCATGCTAATATATATGGATATGGTTTTAACCTC
                      ____________________________________________________________
consensus             CCTGAATAACAACATTTAGGAGTCTTGCATGCTAATATATATGGATATGGTTTTAACCTC
 
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rJMSF030B09+          TATCCTAATGAAGTTTGGAGTTGTCTTCTCATCTGTTCTGATGTGTCAATGTGTGAATAG
                      ____________________________________________________________
consensus             TATCCTAATGAAGTTTGGAGTTGTCTTCTCATCTGTTCTGATGTGTCAATGTGTGAATAG
 
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rJMSF030B09+          GACACACAGGAAAAGAATGGGTTCAAANTCACTACGGAGTATCTTTTGAGCCCATAAATA
                      ____________________________________________________________
consensus             GACACACAGGAAAAGAATGGGTTCAAANTCACTACGGAGTATCTTTTGAGCCCATAAATA