| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012A22 | Sequence | 440 | 009999 (8) | ref|XP_011086546.1| | 2e-28 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic [Sesamum indicum] | 776 | 009999 (8) | ref|XP_009786440.1| | 3e-114 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic isoform X2 [Nicotiana syl |
| JMSF029G15 | Sequence | 508 | 009999 (8) | ref|XP_011086546.1| | 9e-64 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic [Sesamum indicum] | 808 | 009999 (8) | ref|XP_009624955.1| | 8e-102 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic isoform X2 [Nicotiana tom |
| JMSF038J04 | Sequence | 666 | 009999 (8) | ref|XP_009786440.1| | 4e-88 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic isoform X2 [Nicotiana syl | 849 | 009999 (8) | ref|XP_009786442.1| | 4e-128 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic isoform X3 [Nicotiana syl |
| JMSF049A14 | Sequence | 678 | 009999 (8) | ref|XP_011086546.1| | 3e-84 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic [Sesamum indicum] | 758 | 009999 (8) | ref|XP_009624954.1| | 2e-77 | PREDICTED: superoxide dismutase [Fe] 3, chloroplastic isoform X1 [Nicotiana tom |
This contig is upended
. : . : . : . : . : . :
JMSF012A22- GAATGACTAAAGTTGCCTCCCCGT
JMSF049A14- GACTAAAGTTGCCTCCCCGT
____________________________________________________________
consensus GAATGACTAAAGTTGCCTCCCCGT
. : . : . : . : . : . :
JMSF012A22- TATCGCTTTACAAGCAAAAAGAAGAAAGCTTTGAAAGATCCAGTTCCAGAAATATCTTCT
JMSF049A14- TATCGCTTTACAAGCAAAAAGAAGAAAGCTTTGAAAGATCCAGTTCCAGAAATATCTTCT
JMSF029G15- AGAAATATCTTCT
JMSF038J04- ACAAGCAAAAAGAAGAAAGCTTTGAAAGATCCAGTTCCAGAAATATCTTCT
____________________________________________________________
consensus TATCGCTTTACAAGCAAAAAGAAGAAAGCTTTGAAAGATCCAGTTCCAGAAATATCTTCT
. : . : . : . : . : . :
JMSF012A22- ATTTTTAAGCGTCAAGGGAGAGACATGAGTTGGTGTTCCCTTTCTACTACTACTTCAAGC
JMSF049A14- ATTTTTAAGCGTCAAGGGAGAGACATGAGTTGGTGTTCCCTTTCTACTACTACTTCAAGC
JMSF029G15- ATTTTTAAGCGTCAAGGGAGAGACATGAGTTGGTGTTCCCTTTCTACTACTACTTCAAGC
JMSF038J04- ATTTTTAAGCGTCAAGGGAGAGACATGAGTTGGTGTTCCCTTTCTACTACTACTTCAAGC
____________________________________________________________
consensus ATTTTTAAGCGTCAAGGGAGAGACATGAGTTGGTGTTCCCTTTCTACTACTACTTCAAGC
. : . : . : . : . : . :
JMSF012A22- TCTATGATTCTTGACACTTCCAATGCGCCATTGAAGCAATTAAAGAGCTGGGGCAAAATT
JMSF049A14- TCTATGATTCTTGACACTTCCAATGCGCCATTGAAGCAATTAAAGAGCTGGGGCAAAATT
JMSF029G15- TCTATGATTCTTGACACTTCCAATGCGCCATTGAAGCAATTAAAGAGCTGGGGCAAAATT
JMSF038J04- TCTATGATTCTTGACACTTCCAATGCGCCATTGAAGCAATTAAAGAGCTGGGGCAAAATT
____________________________________________________________
consensus TCTATGATTCTTGACACTTCCAATGCGCCATTGAAGCAATTAAAGAGCTGGGGCAAAATT
. : . : . : . : . : . :
JMSF012A22- TCTTATATCGGCTTGAAGAAGCGCGACAGAAGAAGTCATAATCGCTACCCTGCAGGGAAA
JMSF049A14- TCTTATATCGGCTTGAAGAAGCGCGACAGAAGAAGTCATAATCGCTACCCTGCAGGGAAA
JMSF029G15- TCTTATATCGGCTTGAAGAAGCGCGACAGAAGAAGTCATAATCGCTACCCTGCAGGGAAA
JMSF038J04- TCTTATATCGGCTTGAAGAAGCGCGACAGAAGAAGTCATAATCGCTACCCTGCAGGGAAA
____________________________________________________________
consensus TCTTATATCGGCTTGAAGAAGCGCGACAGAAGAAGTCATAATCGCTACCCTGCAGGGAAA
. : . : . : . : . : . :
JMSF012A22- GTTTGTGCCTATTACGGCCTCAAAGCACCTCCGTTTGAACTTGATGCATTAGAGCCATAC
JMSF049A14- GTTTGTGCCTATTACGGCCTCAAAGCACCTCCGTTTGAACTTGATGCATTAGAGCCATAC
JMSF029G15- GTTTGTGCCTATTACGGCCTCAAAGCACCTCCGTTTGAACTTGATGCATTAGAGCCATAC
JMSF038J04- GTTTGTGCCTATTACGGCCTCAAAGCACCTCCGTTTGAACTTGATGCATTAGAGCCATAC
rJMSF038J04+ CTTGATGCATTAGAGCCATAC
____________________________________________________________
consensus GTTTGTGCCTATTACGGCCTCAAAGCACCTCCGTTTGAACTTGATGCATTAGAGCCATAC
. : . : . : . : . : . :
JMSF012A22- ATGAGCCGAAGGACACTAGAGATACACTGGGGTGGGCACCATCGTAGTTATGTGGATGCC
JMSF049A14- ATGAGCCGAAGGACACTAGAGATACACTGGGGTGGGCACCATCGTAGTTATGTGGATGCC
JMSF029G15- ATGAGCCGAAGGACACTAGAGATACACTGGGGTGGGCACCATCGTAGTTATGTGGATGCC
JMSF038J04- ATGAGCCGAAGGACACTAGAGATACACTGGGGTGGGCACCATCGTAGTTATGTGGATGCC
rJMSF012A22+ ATCGTAGTTATGTGGATGCC
rJMSF038J04+ ATGAGCCGAAGGACACTAGAGATACACTGGGGTGGGCACCATCGTAGTTATGTGGATGCC
rJMSF029G15+ GGGTGGGCACCATCGTAGTTATGTGGATGCC
____________________________________________________________
consensus ATGAGCCGAAGGACACTAGAGATACACTGGGGTGGGCACCATCGTAGTTATGTGGATGCC
. : . : . : . : . : . :
JMSF012A22- CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACT
JMSF049A14- CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACTTAT
JMSF029G15- CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACTTAT
JMSF038J04- CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACTTAT
rJMSF012A22+ CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACTTAT
rJMSF049A14+ AGAAGAATGATTTACTGTATGGANTTCCCCATGGAAGAACTTAT
rJMSF038J04+ CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACTTAT
rJMSF029G15+ CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGATTTCACCATGGAAGAACTTAT
____________________________________________________________
consensus CTTAACAAACAGCTTGAGAAGAATGATTTACTGTATGGA-TTCACCATGGAAGAACTTAT
. : . : . : . : . : . :
JMSF049A14- TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
JMSF029G15- TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
JMSF038J04- TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
rJMSF012A22+ TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
rJMSF049A14+ TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
rJMSF038J04+ TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
rJMSF029G15+ TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
____________________________________________________________
consensus TAGAGTGACCTATAACAATGGTAATCCATTACCTGAATTCAACAATGCTGCTCAGGTATG
. : . : . : . : . : . :
JMSF049A14- GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
JMSF029G15- GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
JMSF038J04- GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
rJMSF012A22+ GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
rJMSF049A14+ GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
rJMSF038J04+ GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
rJMSF029G15+ GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
____________________________________________________________
consensus GAATCATGATTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCTACATTGAG
. : . : . : . : . : . :
JMSF049A14- CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
JMSF029G15- CCTACTAAAGCAGAT
JMSF038J04- CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
rJMSF012A22+ CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
rJMSF049A14+ CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
rJMSF038J04+ CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
rJMSF029G15+ CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
____________________________________________________________
consensus CCTACTAAAGCAGATTGAAAAGGATTTTGGCTCATTCACAAATTTCAGAGAGAAGTTCGT
. : . : . : . : . : . :
JMSF049A14- AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGNTTTGAAGAGT
JMSF038J04- AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGTTTTGAAGAGTGAGGA
rJMSF012A22+ AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGTTTTGAAGAGTGAGGA
rJMSF049A14+ AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGTTTTGAAGAGTGAGGA
rJMSF038J04+ AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGTTTTGAAGAGTGAGGA
rJMSF029G15+ AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGTTTTGAAGAGTGAGGA
____________________________________________________________
consensus AGAAGTAGCCCTCACATCATTTGGCTCTGGTTGGGTTTGGCTTGTTTTGAAGAGTGAGGA
. : . : . : . : . : . :
JMSF038J04- GAAACGTCTTGCTGT
rJMSF012A22+ GAAACGTCTTGCTGTTGTTAGAACATCAAATGCTGTCAACCCTCTTTTGTGGAATGACAT
rJMSF049A14+ GAAACGTCTTGCTGTTGTTAGAACATCAAATGCTGTCAACCCTCTTTTGTGGAATGACAT
rJMSF038J04+ GAAACGTCTTGCTGTTGTTAGAACATCAAATGCTGTCAACCCTCTTTTGTGGAATGACAT
rJMSF029G15+ GAAACGTCTTGCTGTTGTTAGAACATCAAATGCTGTCAACCCTCTTTTGTGGAATGACAT
____________________________________________________________
consensus GAAACGTCTTGCTGTTGTTAGAACATCAAATGCTGTCAACCCTCTTTTGTGGAATGACAT
. : . : . : . : . : . :
rJMSF012A22+ TCCTCTCATCTGTTTGGATATGTGGGAACACGCTTATTATATTGATTACCAG--------
rJMSF049A14+ TCCTCTCATCTGTTTGGATATGTGGGAACACGCTTATTATATTGATTACCAGGTAACAAC
rJMSF038J04+ TCCTCTCATCTGTTTGGATATGTGGGAACACGCTTATTATATTGATTACCAG--------
rJMSF029G15+ TCCTCTCATCTGTTTGGATATGTGGGAACACGCTTATTATATTGATTACCAG--------
____________________________________________________________
consensus TCCTCTCATCTGTTTGGATATGTGGGAACACGCTTATTATATTGATTACCAG--------
. : . : . : . : . : . :
rJMSF012A22+ ------AATGATAAAGCCAAGTATGTTAACATGTTCATGAATCACCTTGTTTCTTGGCAA
rJMSF049A14+ TCACAAAATGATAAAGCCAAGTATGTTAACATGTTCATGAATCACCTTGTTTCTTGGCAA
rJMSF038J04+ ------AATGATAAAGCCAAGTATGTTAACATGTTCATGAATCACCTTGTTTCTTGGCAA
rJMSF029G15+ ------AATGATAAAGCCAAGTATGTTAACATGTTCATGAATCACCTTGTTTCTTGGCAA
____________________________________________________________
consensus ------AATGATAAAGCCAAGTATGTTAACATGTTCATGAATCACCTTGTTTCTTGGCAA
. : . : . : . : . : . :
rJMSF012A22+ TCTGCATTGGTACGCATGGCTCGCGCACAGGCATTTGTGAACTTAGGAGAACCCAAAATT
rJMSF049A14+ TCTGCATTGGTACGCATGGCTCGCGCACAGGCATTTGTGAACTTAGGAGAACCCAAAATT
rJMSF038J04+ TCTGCATTGGTACGCATGGCTCGCGCACAGGCATTTGTGAACTTAGGAGAACCCAAAATT
rJMSF029G15+ TCTGCATTGGTACGCATGGCTCGCGCACAGGCATTTGTGAACTTAGGAGAACCCAAAATT
____________________________________________________________
consensus TCTGCATTGGTACGCATGGCTCGCGCACAGGCATTTGTGAACTTAGGAGAACCCAAAATT
. : . : . : . : . : . :
rJMSF012A22+ CCTGTTGCATGACACTCCTCCAACTTTATCGGGAAGTAAATGTCATTAAGCAGAAACAGA
rJMSF049A14+ CCTGTTGCATGACACTCCTCCAACTTTATCGGGAAGTAAATGTCATTAAGCAGAAACAGA
rJMSF038J04+ CCTGTTGCATGACACTCCTCCAACTTTATCGGGAAGTAAATGTCATTAAGCAGAAACAGA
rJMSF029G15+ CCTGTTGCATGACACTCCTCCAACTTTATCGGGAAGTAAATGTCATTAAGCAGAAACAGA
____________________________________________________________
consensus CCTGTTGCATGACACTCCTCCAACTTTATCGGGAAGTAAATGTCATTAAGCAGAAACAGA
. : . : . : . : . : . :
rJMSF012A22+ AGCAGGTGAATGGATTAAATTCAGCAGAGAAGGACCTAAGCGAAATAGCAGAAGATTGGC
rJMSF049A14+ AGCAGGTGAATGGATTAAATTCAGCAGAGAAGGACCTAAGCGAAATAGCAGAAGATTGGC
rJMSF038J04+ AGCAGGTGAATGGATTAAATTCAGCAGAGAAGGACCTAAGCGAAATAGCAGAAGATTGGC
rJMSF029G15+ AGCAGGTGAATGGATTAAATTCAGCAGAGAAGGACCTAAGCGAAATAGCAGAAGATTGGC
____________________________________________________________
consensus AGCAGGTGAATGGATTAAATTCAGCAGAGAAGGACCTAAGCGAAATAGCAGAAGATTGGC
. : . : . : . : . : . :
rJMSF012A22+ AACCAAAGAGAATGGGCGCCAAAATGGCGTTTTTGGATCAAAGAATAAAACCAGCTTTGT
rJMSF049A14+ AACCAAAGAGAATGGGCGCCAAAATGGCGTTTTTGGATCAAAGAATAAAACCAGCTTTGT
rJMSF038J04+ AACCAAAGAGAATGGGCGCCAAAATGGCGTTTTTGGATCAAAGAATAAAACCAGCTTTGT
rJMSF029G15+ AACCAAAGAGAATGGGCGCCAAAATGGCGTTTTTGGATCAAAGAATAAAACCAGCTTTGT
____________________________________________________________
consensus AACCAAAGAGAATGGGCGCCAAAATGGCGTTTTTGGATCAAAGAATAAAACCAGCTTTGT
. : . : . : . : . : . :
rJMSF012A22+ CTGCTTGCATAGGACTGACCAGGGATTTGATATTTGAAGTTGTAGGC
rJMSF049A14+ CTGCTTGCATAGGACTGACCAGGGATTTGATATTTGAAGTTGTAGGC
rJMSF038J04+ CTGCTTGCATAGGACTGA-CAGGGATTTGATATTTGAAGTTGTAGGC
rJMSF029G15+ CTGCTTGCATAGGACTGA-CAGGGATTTGATATTTGAAGTTGTAGGCAGTGTTTGGATAT
____________________________________________________________
consensus CTGCTTGCATAGGACTGACCAGGGATTTGATATTTGAAGTTGTAGGCAGTGTTTGGATAT