Contig 009997:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF027G13-                                                           GGTAGGAAATAT
                      ____________________________________________________________
consensus                                                             GGTAGGAAATAT
 
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JMSF027G13-           TCCACACTGCCTCGAAGGGCGAATCTCTGTGCGGTAATTCCATCTTCTCCGAGAACTAAC
                      ____________________________________________________________
consensus             TCCACACTGCCTCGAAGGGCGAATCTCTGTGCGGTAATTCCATCTTCTCCGAGAACTAAC
 
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JMSF010J02-                                                    GGGGATAGTTGATTCAGGA
JMSF027G13-           TACAAAATCTAAAACAAAAAAGCAAACAATTTCGTCCCAGAGGGGATAGTTGATTCAGGA
                      ____________________________________________________________
consensus             TACAAAATCTAAAACAAAAAAGCAAACAATTTCGTCCCAGAGGGGATAGTTGATTCAGGA
 
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JMSF010J02-           AATGGCAGACCGTTTCTTTCCGAACGAAATGCCTAATTTCATCCCAGAAACCGCAGAGGC
JMSF027G13-           AATGGCAGACCGTTTCTTTCCGAACGAAATGCCTAATTTCATCCCAGAAACCGCAGAGGC
                      ____________________________________________________________
consensus             AATGGCAGACCGTTTCTTTCCGAACGAAATGCCTAATTTCATCCCAGAAACCGCAGAGGC
 
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JMSF010J02-           AGAAGAGCTAGCGGAAAAAGCGCAAGACTCACTCACTAAGCTTCTACATCTTCCTTACAA
JMSF027G13-           AGAAGAGCTAGCGGAAAAAGCGCAAGACTCACTCACTAAGCTTCTACATCTTCCTTACAA
                      ____________________________________________________________
consensus             AGAAGAGCTAGCGGAAAAAGCGCAAGACTCACTCACTAAGCTTCTACATCTTCCTTACAA
 
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JMSF010J02-           GAACGTCGCGAAGAAAATACAAAAATCTGCTTTGGTGCTTAAAGAAAAGATTGTGGAGGA
JMSF027G13-           GAACGTCGCGAAGAAAATACAAAAATCTGCTTTGGTGCTTAAAGAAAAGATTGTGGAGGA
                      ____________________________________________________________
consensus             GAACGTCGCGAAGAAAATACAAAAATCTGCTTTGGTGCTTAAAGAAAAGATTGTGGAGGA
 
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JMSF010J02-           GACGTGGGTAGCTAAGGGGAAACGCGTGAGTGACTATTCACTGTACACTGGGGCTCTGGG
JMSF027G13-           GACGTGGGTAGCTAAGGGGAAACGCGTGAGTGACTATTCACTGTACACTGGGGCTCTGGG
                      ____________________________________________________________
consensus             GACGTGGGTAGCTAAGGGGAAACGCGTGAGTGACTATTCACTGTACACTGGGGCTCTGGG
 
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JMSF010J02-           CACTGCTTTCTTGTTGTTTAAAGCTTACCAAGTTAGCAAAGACAGGAATGATCTTGCTTT
JMSF027G13-           CACTGCTTTCTTGTTGTTTAAAGCTTACCAAGTTAGCAAAGACAGGAATGATCTTGCTTT
                      ____________________________________________________________
consensus             CACTGCTTTCTTGTTGTTTAAAGCTTACCAAGTTAGCAAAGACAGGAATGATCTTGCTTT
 
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JMSF010J02-           GTGCTTGGAGATAACCAGTGCTTGTGATCTTGCTTCTCGCGGTTCTGGGCGGGTCACATT
JMSF027G13-           GTGCTTGGAGATAACCAGTGCTTGTGATCTTGCTTCTCGCGGTTCTGGGCGGGTCACATT
                      ____________________________________________________________
consensus             GTGCTTGGAGATAACCAGTGCTTGTGATCTTGCTTCTCGCGGTTCTGGGCGGGTCACATT
 
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JMSF010J02-           CATATGTGG                                                   
JMSF027G13-           CATATGTGGGCAGGCGGGTGTATGTGCCCTTGGTTCAGTTGTGGCAATGCACATTGGCAA
rJMSF027G13+                                                                TGGCAA
                      ____________________________________________________________
consensus             CATATGTGGGCAGGCGGGTGTATGTGCCCTTGGTTCAGTTGTGGCAATGCACATTGGCAA
 
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JMSF027G13-           TGAACGGTTATGTAGCCATTACTTGGCGCAATTTAAGGAGCGAGCAGTAGTGGATGATGT
rJMSF027G13+          TGAACNGTTATGTAGCCA-TACTNGGCGCAATTTAAGGAGCGAGCAGTAGTGGATGATGT
                      ____________________________________________________________
consensus             TGAACGGTTATGTAGCCATTACTTGGCGCAATTTAAGGAGCGAGCAGTAGTGGATGATGT
 
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JMSF027G13-           TATAAGATCTGGCCATAAAATGGCGACNGGGAGATGCCCTTTGATGTATGAGT       
rJMSF027G13+          TATAAGATCTGGCCATAAAATGGCGACAGGGAGATGCCCTTTGATGTATGAGTGGCATGG
rJMSF028G13+                       CATAAAATGGCGACANGGAGATGCCNTTTGATGTATGAGTGGCATGG
                      ____________________________________________________________
consensus             TATAAGATCTGGCCATAAAATGGCGACAGGGAGATGCCCTTTGATGTATGAGTGGCATGG
 
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rJMSF010J02+                              CCCATGGTCTGGCTGGTATTATGCANGTATNGANGGACAN
rJMSF027G13+          GAAAAAATACTGGGGGGCTGCCCATGGTCTGGCTGGTATTATGCATGTATTGATGGACAT
rJMSF028G13+          GAAAAAATACTGGGGGGCTGCCCATGGTCTGGCTGGTANTATGCATGTATTGATGGACAT
                      ____________________________________________________________
consensus             GAAAAAATACTGGGGGGCTGCCCATGGTCTGGCTGGTATTATGCATGTATTGATGGACAT
 
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rJMSF010J02+          GGAACTGAAACCGGATGAGCTGGAGGATATCAAGTGCACCCTGCGTTTTATGATCAGGAA
rJMSF027G13+          GGAACTGAAACCGGATGAGCTGGAGGATATCAAGTGCACCCTGCGTTTTATGATCAGGAA
rJMSF028G13+          GGAACTGNANCCGGATGAGCTGGAGGATATCAAGTGCACCNTGCGTTNTATGATCAGGAA
                      ____________________________________________________________
consensus             GGAACTGAAACCGGATGAGCTGGAGGATATCAAGTGCACCCTGCGTTTTATGATCAGGAA
 
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rJMSF010J02+          CCGCTTTCCTAGTGGGAATTACCCTTCAAGTGAAGGAAATGAATCAGATCGTCTTGTGCA
rJMSF027G13+          CCGCTTTCCTAGTGGGAATTACCCTTCAAGTGAAGGAAATGAATCAGATCGTCTTGTGCA
rJMSF028G13+          CCGCTTTCCTANTGGGAATTACCCTTCAAGNGAAGGAAATGAATCAGATCGTCTTGTGCA
                      ____________________________________________________________
consensus             CCGCTTTCCTAGTGGGAATTACCCTTCAAGTGAAGGAAATGAATCAGATCGTCTTGTGCA
 
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rJMSF010J02+          TTGGTGCCATGGTGCTCCTGGCCTTGCTCTTACTCTTACAAAGGCAGCAAAGGTTTTTAA
rJMSF027G13+          TTGGTGCCATGGTGCTCCTGGCCTTGCTCTTACTCTTACAAAGGCAGCAAAGGTTTTTAA
rJMSF028G13+          TTGGTGCCATGGTGCTCCTGGCCTTGCTCTTACTCTTACAAAGGCAGCAAAGGTTTTTAA
                      ____________________________________________________________
consensus             TTGGTGCCATGGTGCTCCTGGCCTTGCTCTTACTCTTACAAAGGCAGCAAAGGTTTTTAA
 
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rJMSF010J02+          CAGTGNGGAGTTTCTTCAAGCAGCTGTAGATGCAGCTGAGGTGGTCTGGAATCGGGGACT
rJMSF027G13+          CAGTGAGGAGTTTCTTCAAGCAGCTGTAGATGCAGCTGAGGTGGTCTGGAATCGGGGACT
rJMSF028G13+          CAGTGAGGAGTTTCTTCAAGCAGCTGTAGATGCAGCTGAGGTGGTCTGGAATCGGGGACT
                      ____________________________________________________________
consensus             CAGTGAGGAGTTTCTTCAAGCAGCTGTAGATGCAGCTGAGGTGGTCTGGAATCGGGGACT
 
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rJMSF010J02+          ACTAAAACGAGTTGGTATTTGTCACGGTATCAGTGGGAACTCGTATGTATTTCTTGCACT
rJMSF027G13+          ACTAAAACGAGTTGGTATTTGTCACGGTATCAGTGGGAACTCGTATGTATTTCTTGCACT
rJMSF028G13+          ACTAAAACGAGTTGGTATTTGTCACGGTATCAGTGGGAACTCGTATGTATTTCTTGCACT
                      ____________________________________________________________
consensus             ACTAAAACGAGTTGGTATTTGTCACGGTATCAGTGGGAACTCGTATGTATTTCTTGCACT
 
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rJMSF010J02+          TTACCGATTAACAGGTGACATGAAATATTTGTACCGGGCAAAGGCATTTGCTTGCTTTCT
rJMSF027G13+          TTACCGATTAACAGGTGACATGAAATATTTGTACCGGGCAAAGGCATTTGCTTGCTTTCT
rJMSF028G13+          TTACCGATTAACAGGTGACATGAAATATTTGTNCCGGGCAAAGGCATTTGCTTGCTTTCT
                      ____________________________________________________________
consensus             TTACCGATTAACAGGTGACATGAAATATTTGTACCGGGCAAAGGCATTTGCTTGCTTTCT
 
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rJMSF010J02+          GCACAATAGAGCTCAAACTCTTATATCAGAGGGAATTATGCATGGCGGTGATCGTCCATA
rJMSF027G13+          GCACAATAGAGCTCAAACTCTTATATCAGAGGGAATTATGCATGGCGGTGATCGTCCATA
rJMSF028G13+          GCACAATAGAGCTCAAACTCTTATATCAGAGGGAANTATGCATGGCGGTGATCGTCCATA
                      ____________________________________________________________
consensus             GCACAATAGAGCTCAAACTCTTATATCAGAGGGAATTATGCATGGCGGTGATCGTCCATA
 
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rJMSF010J02+          CTCACTATTTGAAGGCATTGGGGGTATGGCTTATCTCTTTCTGGACATGACAGAACCGCT
rJMSF027G13+          CTCACTATTTGAAGGCATTGGGGGTATGGCTTATCTCTTTCTGGACATGACAGAACCGCT
rJMSF028G13+          CTCACTATTTNAAGGCATTGGGGGTATGGCTTATCTCTTTCNGGNCATGACAGAACCGCT
                      ____________________________________________________________
consensus             CTCACTATTTGAAGGCATTGGGGGTATGGCTTATCTCTTTCTGGACATGACAGAACCGCT
 
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rJMSF010J02+          TGACACAAGGTTCCCTGCTTATGAACTTTAGTTCTATGCAAAATATAATGAAGTGTTTAT
rJMSF027G13+          TGACACAAGGTTCCCTGCTTATGAACTTTAGTTCTATGCAAAATATAATGAAGTGTTTAT
rJMSF028G13+          TGACACAAGGTTCCCTGCTTATGAACTTCAGTTCTATGCAAAATATAATGAAGTGTTTAT
                      ____________________________________________________________
consensus             TGACACAAGGTTCCCTGCTTATGAACTTTAGTTCTATGCAAAATATAATGAAGTGTTTAT
 
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rJMSF010J02+          ACNTGATATG-ACTGTCNTGTTATCTGTTTAGTGTTCCGAAATGC               
rJMSF027G13+          ACTTGATATG-ACTGTCTTGTTATCTGTTTAGTGTTCCGAAATGCTGCGATGTTTAGTTT
rJMSF028G13+          ACTTGATATGAACTGTCTTGTTATCTGTTTAGTGTTCCGNAATGCTGCGATGTTTAGTTT
                      ____________________________________________________________
consensus             ACTTGATATG-ACTGTCTTGTTATCTGTTTAGTGTTCCGAAATGCTGCGATGTTTAGTTT