Contig 009989:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027B09Sequence580007914 (4)ref|XP_009591477.1|5e-29PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]748009989 (4)
JMSF027I04Sequence585007914 (4)ref|XP_009591477.1|5e-41PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]709009989 (4)
JMSF030K24Sequence613007914 (4)ref|XP_009591477.1|3e-42PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]700009989 (4)
JMSF046C09Sequence825007914 (4)ref|XP_009591477.1|3e-52PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]721009989 (4)

Alignment

This contig is upended


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rJMSF046C09+                                            TTCAACCTATTTCNTAGGTGTAAGAT
rJMSF027B09+                                          TCTTCAACCTATTTCTTAGGTGTAAGAT
                      ____________________________________________________________
consensus                                             TCTTCAACCTATTTCTTAGGTGTAAGAT
 
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rJMSF030K24+             TGCAATCCTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATG-TTTTGTTG
rJMSF046C09+          CATTGCAATCTTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATGTTTTTGTTG
rJMSF027I04+             TGCAATCTTGAGGTTTCAGTTCATCAAAAAATATAAATCATAAGTATGTTTTTGTTG
rJMSF027B09+          CATTGCAATCTTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATGTTTTTGTTG
                      ____________________________________________________________
consensus             CATTGCAATCTTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATGTTTTTGTTG
 
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rJMSF030K24+          CATTTAGAGATCAATTAGGANCCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
rJMSF046C09+          CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
rJMSF027I04+          CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
rJMSF027B09+          CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
                      ____________________________________________________________
consensus             CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
 
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rJMSF030K24+          TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
rJMSF046C09+          TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
rJMSF027I04+          TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
rJMSF027B09+          TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
                      ____________________________________________________________
consensus             TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
 
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rJMSF030K24+          ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
rJMSF046C09+          ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
rJMSF027I04+          ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
rJMSF027B09+          ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
                      ____________________________________________________________
consensus             ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
 
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rJMSF030K24+          TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
rJMSF046C09+          TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
rJMSF027I04+          TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
rJMSF027B09+          TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
                      ____________________________________________________________
consensus             TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
 
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rJMSF030K24+          GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
rJMSF046C09+          GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
rJMSF027I04+          GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
rJMSF027B09+          GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
                      ____________________________________________________________
consensus             GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
 
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rJMSF030K24+          GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
rJMSF046C09+          GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
rJMSF027I04+          GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
rJMSF027B09+          GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
                      ____________________________________________________________
consensus             GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
 
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rJMSF030K24+          TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
rJMSF046C09+          TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
rJMSF027I04+          TGTGTGATCGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
rJMSF027B09+          TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
                      ____________________________________________________________
consensus             TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
 
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rJMSF030K24+          TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
rJMSF046C09+          TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
rJMSF027I04+          TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
rJMSF027B09+          TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
                      ____________________________________________________________
consensus             TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
 
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rJMSF030K24+          GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
rJMSF046C09+          GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
rJMSF027I04+          GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
rJMSF027B09+          GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACCGCAGTGCAGGAATTAT
                      ____________________________________________________________
consensus             GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
 
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rJMSF030K24+          TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
rJMSF046C09+          TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
rJMSF027I04+          TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
rJMSF027B09+          TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
                      ____________________________________________________________
consensus             TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
 
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rJMSF030K24+          AACTTTTAGGTGAGTAGAATTTTCAATATGCTT                           
rJMSF046C09+          AACTTTTAGGTGAGTAGAATTTTCAATATGCTT                           
rJMSF027I04+          AACTTTTAGGTGAGTAGAATTTTCAATATGCTT                           
rJMSF027B09+          AACTTTTAGGTGAGTAGAATTTTCAATATGCTTTTTAGTTGTGGTTGGAAGACAAATCTT
                      ____________________________________________________________
consensus             AACTTTTAGGTGAGTAGAATTTTCAATATGCTTTTTAGTTGTGGTTGGAAGACAAATCTT