Contig 009985:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026C21Sequence620006253 (4)emb|CAN81315.1|1e-59hypothetical protein VITISV_031609 [Vitis vinifera]643009985 (2)ref|XP_009795445.1|3e-79PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Nicotiana syl
JMSF030F19Sequence676006253 (4)emb|CAN81315.1|4e-60hypothetical protein VITISV_031609 [Vitis vinifera]748009985 (2)ref|XP_004238906.1|6e-130PREDICTED: 3-isopropylmalate dehydrogenase, chloroplastic [Solanum lycopersicum

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030F19+ ATACTGAGGTTTATGCAACTTACGAGGTAGAACGTATT
                      ____________________________________________________________
consensus ATACTGAGGTTTATGCAACTTACGAGGTAGAACGTATT
 
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rJMSF030F19+ GCTCGTGTAGCATTTGAAACTGCACGAAAACGTCGAGGAAAACTCTGTTCTGTTGATAAA
                      ____________________________________________________________
consensus GCTCGTGTAGCATTTGAAACTGCACGAAAACGTCGAGGAAAACTCTGTTCTGTTGATAAA
 
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rJMSF030F19+ GCAAATGTGTTGGAGGCCTCTATGCATTGGAGAAGGATTGTGTCAGAGTTGTCCAAAGAG
                      ____________________________________________________________
consensus GCAAATGTGTTGGAGGCCTCTATGCATTGGAGAAGGATTGTGTCAGAGTTGTCCAAAGAG
 
. : . : . : . : . : . :
rJMSF030F19+ TACCCTGATGTTGAACTTTCACATATGTATGTGGACAACGCTGCCATGCAGCTTGTTCGC
rJMSF026C21+ TTCACATATGTATGTGGACAACGCTGCCNTGCAGCTTGTTCGC
                      ____________________________________________________________
consensus TACCCTGATGTTGAACTTTCACATATGTATGTGGACAACGCTGCCATGCAGCTTGTTCGC
 
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rJMSF030F19+ AATCCAAAACAGTTTGATACGATTGTAACAAACAATATATTTGGTGATATTCTATCTGAT
rJMSF026C21+ AATCCNAAACAGTTTGATACGATTGTAACAAACNATATATTTGGTGATATTCTATNTGAT
                      ____________________________________________________________
consensus AATCCAAAACAGTTTGATACGATTGTAACAAACAATATATTTGGTGATATTCTATCTGAT
 
. : . : . : . : . : . :
rJMSF030F19+ GAAGCTTCAATGATTACTGGAAGTATTGGTATGCTTCCATCTGCCAGTGTTGGAGAATCG
rJMSF026C21+ GAAGCTTCAATGATTACTGGAAGTATTGGTATGNTTCCATCTGCCAGTGTTGGAGAATCG
                      ____________________________________________________________
consensus GAAGCTTCAATGATTACTGGAAGTATTGGTATGCTTCCATCTGCCAGTGTTGGAGAATCG
 
. : . : . : . : . : . :
rJMSF030F19+ GGACCTGGACTCTTTGAGCCAATACATGGTTCTGCTCCTGATATCGCTGGACAGGATAAA
rJMSF026C21+ GGACCTGGACTNTTTGAGCCNATACNTGGTTNTGCTCCTGATATTGCTGGACNGGATAAA
                      ____________________________________________________________
consensus GGACCTGGACTCTTTGAGCCAATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAA
 
. : . : . : . : . : . :
rJMSF030F19+ GCAAATCCTTTAGCAACAGTGCTTAGTGCTGCTATGCTTCTCAAATATGGCCTAGGAGAG
rJMSF026C21+ GCAAATCCTTTAGCAACNGTGCTTAGTGCTGNTATGCTTNTCAAATATGGCCTNGGAGAG
                      ____________________________________________________________
consensus GCAAATCCTTTAGCAACAGTGCTTAGTGCTGCTATGCTTCTCAAATATGGCCTAGGAGAG
 
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rJMSF030F19+ GAGAAGGCTGCTCAGAGGATTGAGGCAGCTGTTTTGGACACTTTAAATCAAGGATTTCGC
rJMSF026C21+ GAGAAGGCTGCTCAGAGGNTTGAGGCAGCTGTTCTGGACNCNTTAAATCAAGGATTTCGC
                      ____________________________________________________________
consensus GAGAAGGCTGCTCAGAGGATTGAGGCAGCTGTTTTGGACACTTTAAATCAAGGATTTCGC
 
. : . : . : . : . : . :
rJMSF030F19+ ACTAGTGACATATATTCTGCTGGGCATAAATTAGTCGGGTGCAAGGAAATGGGTGAAGAA
rJMSF026C21+ NCTGGNGACATATATTTTGCTGGGCATAAATTAGTCGGGTGCAAGGAAATGGGTGAAGAA
                      ____________________________________________________________
consensus ACTGGTGACATATATTTTGCTGGGCATAAATTAGTCGGGTGCAAGGAAATGGGTGAAGAA
 
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rJMSF030F19+ GTGCTGAAGTCAATAGAAGCTCAAGTTCCTGTATTGCTTAGCTGATCATGGGCTTGTTCT
rJMSF026C21+ GTGCTGAAGTCNATAGAAGCTCAAGTTCCGGTATTGCTGGGCTGATCTTGTACTTGTTCT
                      ____________________________________________________________
consensus GTGCTGAAGTCAATAGAAGCTCAAGTTCCTGTATTGCTTGGCTGATCTTGTGCTTGTTCT
 
. : . : . : . : . : . :
rJMSF030F19+ TTTGGTTGGGTGTTAGGTTGCATTATCTTCCTTGTTGCATGTGACACTGAGAATTTTAAT
rJMSF026C21+ TTTGGTTGGGTGTTAGGGTGCNTTATNTTCCNTGTTGCNTGNGACNCCGAGAATTTTAAT
                      ____________________________________________________________
consensus TTTGGTTGGGTGTTAGGTTGCATTATCTTCCTTGTTGCATGTGACACTGAGAATTTTAAT
 
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rJMSF030F19+ TATATTCACGGAGG
rJMSF026C21+ TATATTCNCGGAGGTGAACTTGTTTGTTGAAGATGAACCCCNTGGANTTTTATTTTTTAT
                      ____________________________________________________________
consensus TATATTCACGGAGGTGAACTTGTTTGTTGAAGATGAACCCCNTGGANTTTTATTTTTTAT
 
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rJMSF026C21+ TTTTTAAANTTCTGTTTTCCNNGTTTATTTTTGCNTTCATATGTTGTTTGAATTGTGAAC
                      ____________________________________________________________
consensus TTTTTAAANTTCTGTTTTCCNNGTTTATTTTTGCNTTCATATGTTGTTTGAATTGTGAAC