Contig 009982:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009B09Sequence605009982 (2)ref|XP_010267970.1|2e-83PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X2 [Nelumbo nucif
JMSF025L01Sequence663009982 (2)ref|XP_009796847.1|2e-110PREDICTED: beta-carotene isomerase D27, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF009B09-                                              GTGCAGCAGATTGGTATGGCTCTGG
                      ____________________________________________________________
consensus                                                GTGCAGCAGATTGGTATGGCTCTGG
 
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JMFF009B09-           CTCTGGCTCTGGTTCGCCCACCTCACTTAGCTCGCCTCCGCCTCTCCGTCGACCTAACAC
                      ____________________________________________________________
consensus             CTCTGGCTCTGGTTCGCCCACCTCACTTAGCTCGCCTCCGCCTCTCCGTCGACCTAACAC
 
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JMFF009B09-           TAGTCTCCGGCATCCAACTGTTGGAGTTTTCTGTTCCTCCAAACCTCTGCCGACAGATGC
                      ____________________________________________________________
consensus             TAGTCTCCGGCATCCAACTGTTGGAGTTTTCTGTTCCTCCAAACCTCTGCCGACAGATGC
 
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JMFF009B09-           AGGCGGCAGAAGTGAATACAAGCCCGGCCCCCTGGATAACCTCTTCCTTCATTTGTTCCG
rJMSF025L01+                                                                   CCG
                      ____________________________________________________________
consensus             AGGCGGCAGAAGTGAATACAAGCCCGGCCCCCTGGATAACCTCTTCCTTCATTTGTTCCG
 
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JMFF009B09-           TAGCAAAATGGTCCAGGAGTCGGGATGGGACTCCGACAAGCCTGGATATGATGGACTAAT
rJMSF025L01+          TAGCAAAATGGTCCAGGAGTCGGGATGGGACTCCGACAAGCCTGGATATGATGGACTAAT
                      ____________________________________________________________
consensus             TAGCAAAATGGTCCAGGAGTCGGGATGGGACTCCGACAAGCCTGGATATGATGGACTAAT
 
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JMFF009B09-           TGAAGTTGCCAACCGTCTTGTTATTGGTCGAAGCAATTCTGAAACAAGAGAAGCCGCTGT
rJMSF025L01+          TGAAGTTGCCAACCGTCTTGTTATTGGTCGAAGCAATTCTGAAACAAGAGAAGCCGCTGT
                      ____________________________________________________________
consensus             TGAAGTTGCCAACCGTCTTGTTATTGGTCGAAGCAATTCTGAAACAAGAGAAGCCGCTGT
 
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JMFF009B09-           CCGTATATTGCAATCACTCTTTCCTCCTTGGCTGTTACATCTCTATAAAATGCTTATTGG
rJMSF025L01+          CCGTATATTGCAATCACTCTTTCCTCCTTGGCTGTTACATCTCTATAAAATGCTTATTGG
                      ____________________________________________________________
consensus             CCGTATATTGCAATCACTCTTTCCTCCTTGGCTGTTACATCTCTATAAAATGCTTATTGG
 
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JMFF009B09-           ACCTTTAGCCGGAGGGAGTGTTGCGGCCGTGATGGTAGCAAGAGTGACGGCATTATCTTG
rJMSF025L01+          ACCTTTAGCCGGAGGGAGTGTTGCGGCCGTGATGGTAGCAAGAGTGACGGCATTATCTTG
                      ____________________________________________________________
consensus             ACCTTTAGCCGGAGGGAGTGTTGCGGCCGTGATGGTAGCAAGAGTGACGGCATTATCTTG
 
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JMFF009B09-           CAAATGGCTCATGGGTCCTTGCACTGTCAACTCTGTGGATCTTCCTAACGGATCCTCCTG
rJMSF025L01+          CAAATGGCTCATGGGTCCTTGCACTGTCAACTCTGTGGATCTTCCTAACGGATCCTCCTG
                      ____________________________________________________________
consensus             CAAATGGCTCATGGGTCCTTGCACTGTCAACTCTGTGGATCTTCCTAACGGATCCTCCTG
 
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JMFF009B09-           GATGAGTGGGGTGTTTGTAGAGAGATGCAAGTATTTAGAAGAGAGCAAATGCGTGGGTAT
rJMSF025L01+          GATGAGTGGGGTGTTTGTAGAGAGATGCAAGTATTTAGAAGAGAGCAAATGCGTGGGTAT
                      ____________________________________________________________
consensus             GATGAGTGGGGTGTTTGTAGAGAGATGCAAGTATTTAGAAGAGAGCAAATGCGTGGGTAT
 
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JMFF009B09-           ATGTATCAATACATGTAAGCTCCCTACACAGGCTTTCTTT                    
rJMSF025L01+          ATGTATCAATACATGTAAGCTCCCTACACAGGCTTTCTTTAAGGATTGTATGGGAGTTCC
                      ____________________________________________________________
consensus             ATGTATCAATACATGTAAGCTCCCTACACAGGCTTTCTTTAAGGATTGTATGGGAGTTCC
 
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rJMSF025L01+          TTTGCTTATGGAGCCAAACTTCAGTGACTATAGCTGCCAGTTCAAGTTTGGGATCCTGCC
                      ____________________________________________________________
consensus             TTTGCTTATGGAGCCAAACTTCAGTGACTATAGCTGCCAGTTCAAGTTTGGGATCCTGCC
 
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rJMSF025L01+          TCCCCATGATGATGACACTGTAAAGGAACCTTGCCTCGAGATATGCCCAAACGCCATTAG
                      ____________________________________________________________
consensus             TCCCCATGATGATGACACTGTAAAGGAACCTTGCCTCGAGATATGCCCAAACGCCATTAG
 
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rJMSF025L01+          ACGGAAGGAAGATGCATTAAAGTGTCCAAAGGCGTGAGTGAGACATTGTACAACTTTCTC
                      ____________________________________________________________
consensus             ACGGAAGGAAGATGCATTAAAGTGTCCAAAGGCGTGAGTGAGACATTGTACAACTTTCTC
 
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rJMSF025L01+          TTAGCTTCAATGTATATGTAGTATAATTCTATCTTGTTCACACACCATTACTCTAGTGCA
                      ____________________________________________________________
consensus             TTAGCTTCAATGTATATGTAGTATAATTCTATCTTGTTCACACACCATTACTCTAGTGCA