Contig 009980:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024G20Sequence695014668ref|XP_004245449.1|6e-66PREDICTED: snurportin-1 [Solanum lycopersicum] ref|XP_010325319.1| PREDICTED: sn771009980 (2)ref|XP_009613386.1|2e-129PREDICTED: snurportin-1 [Nicotiana tomentosiformis]
JMSF025G20Sequence725009980 (2)ref|XP_009613386.1|3e-128PREDICTED: snurportin-1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF024G20+                  GATCNAACGTATTATGTGANTGACATGGTTTGTTGGGCGGGGTTTTTCGTTA
rJMSF025G20+                                                                 CGTTA
                      ____________________________________________________________
consensus                     GATCNAACGTATTATGTGANTGACATGGTTTGTTGGGCGGGGTTTTTCGTTA
 
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rJMSF024G20+          TATGAGTGCACTGCTGAGTTCCGATTCTACTGGTTGAACACTAAACTTGCCGAGACGGGG
rJMSF025G20+          TATGAGTGCACTGCTGAGTTCCGATTCTACTGGTTGAACACTAAACTTGCCGAGACGGGG
                      ____________________________________________________________
consensus             TATGAGTGCACTGCTGAGTTCCGATTCTACTGGTTGAACACTAAACTTGCCGAGACGGGG
 
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rJMSF024G20+          GCTTGTGAGGCTCCCTCGACGTACCATAGATATAGATTTAGTAGCGTTCCAGTCTATGAT
rJMSF025G20+          GCTTGTGAGGCTCCCTCGACGTACCATAGATATAGATTTAGTAGCGTTCCAGTCTATGAT
                      ____________________________________________________________
consensus             GCTTGTGAGGCTCCCTCGACGTACCATAGATATAGATTTAGTAGCGTTCCAGTCTATGAT
 
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rJMSF024G20+          TGTGTCCAGGAAGGACTTCATTCTGCTTATACAGGGCCCGTGCCATATGTCAAGGATGGA
rJMSF025G20+          TGTGTCCAGGAAGGACTTCATTCTGCTTATACAGGGCCCGTGCCATATGTCAAGGATGGA
                      ____________________________________________________________
consensus             TGTGTCCAGGAAGGACTTCATTCTGCTTATACAGGGCCCGTGCCATATGTCAAGGATGGA
 
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rJMSF024G20+          CTGCTTTTCTACAATAAGCAAGCACACTATCAAACAGGGAATACACCACTTGTGTTGGTT
rJMSF025G20+          CTGCTTTTCTACAATAAGCAAGCACACTATCAAACAGGGAATACACCACTTGTGTTGGTT
                      ____________________________________________________________
consensus             CTGCTTTTCTACAATAAGCAAGCACACTATCAAACAGGGAATACACCACTTGTGTTGGTT
 
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rJMSF024G20+          TGGAAGGACACAAATTGTAGCCAGTATGTCATTGATACTGATAATAAAGGAGAAATTCCA
rJMSF025G20+          TGGAAGGACACAAATTGTAGCCAGTATGTCATTGATACTGATAATAAAGGAGAAATTCCA
                      ____________________________________________________________
consensus             TGGAAGGACACAAATTGTAGCCAGTATGTCATTGATACTGATAATAAAGGAGAAATTCCA
 
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rJMSF024G20+          ACTCAACAACAGGTAGTTTTGGAGCTATTGGATGATGGGAGACTGGCGACGTCAGATGAT
rJMSF025G20+          ACTCAACAACAGGTAGTTTTGGAGCTATTGGATGATGGGAGACTGGCGACGTCAGATGAT
                      ____________________________________________________________
consensus             ACTCAACAACAGGTAGTTTTGGAGCTATTGGATGATGGGAGACTGGCGACGTCAGATGAT
 
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rJMSF024G20+          CCTCCTGTTATATTTGGATGCTTGAATGCGGAATTCATCCAACAGACTGGACTACGCTCG
rJMSF025G20+          CCTCCTGTTATATTTGGATGCTTGAATGCGGAATTCATCCAACAGACTGGACTACGCTCG
                      ____________________________________________________________
consensus             CCTCCTGTTATATTTGGATGCTTGAATGCGGAATTCATCCAACAGACTGGACTACGCTCG
 
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rJMSF024G20+          GGAGACCTTCTGCGTTTTTCTATTAGCGAAGGTGGATTAGTTTTGGTAGATGGTAAACTG
rJMSF025G20+          GGAGACCTTCTGCGTTTTTCTATTAGCGAAGGTGGATTAGTTTTGGTAGATGGTAAACTG
                      ____________________________________________________________
consensus             GGAGACCTTCTGCGTTTTTCTATTAGCGAAGGTGGATTAGTTTTGGTAGATGGTAAACTG
 
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rJMSF024G20+          GAGAAGGCTGATTTGCAATACCTTGGCAAACCCAACCGTTCACGTGCCTTCGCTGATAGT
rJMSF025G20+          GAGAAGGCTGATTTGCAATACCTTGGCAAACCCAACCGTTCACGTGCCTTCGCTGATAGT
                      ____________________________________________________________
consensus             GAGAAGGCTGATTTGCAATACCTTGGCAAACCCAACCGTTCACGTGCCTTCGCTGATAGT
 
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rJMSF024G20+          TACTCCAAGGTTCTGTTCCAGTATGCAGTTCGACATTCTCCTCTACAAATCGAGCATATT
rJMSF025G20+          TACTCCAAGGTTCTGTTCCAGTATGCAGTTCGACATTCTCCTCTACAAATCGAGCATATT
                      ____________________________________________________________
consensus             TACTCCAAGGTTCTGTTCCAGTATGCAGTTCGACATTCTCCTCTACAAATCGAGCATATT
 
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rJMSF024G20+          TTTGCATCGATTAGCTCACCTGTTAGTGACGAAAGTGCAAGTCGTGATACAGAGATGACT
rJMSF025G20+          TTTGCATCGATTAGCTCACCTGTTAGTGACGAAAGTGCAAGTCGTGATACAGAGATGACT
                      ____________________________________________________________
consensus             TTTGCATCGATTAGCTCACCTGTTAGTGACGAAAGTGCAAGTCGTGATACAGAGATGACT
 
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rJMSF024G20+          GGCTGAAAAGTACCACTTGAAACAGAAGCATATTTGGTAAATTCTAAAGACCG       
rJMSF025G20+          GGCTGAAAAGTACCACTTGAAACAGAAGCATATTTGGTAAATTCTAAAGACCGGAAATGA
                      ____________________________________________________________
consensus             GGCTGAAAAGTACCACTTGAAACAGAAGCATATTTGGTAAATTCTAAAGACCGGAAATGA