Contig 009979:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004C19Sequence329013464 (3)ref|XP_006346399.1|3e-29PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]355009979 (4)ref|XP_008226124.1|4e-07PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67
JMSF017C18Sequence452006540 (5)ref|XP_011007635.1|2e-18PREDICTED: cysteine-rich receptor-like protein kinase 10 [Populus euphratica]760009979 (4)gb|EYU34172.1|4e-57hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]
JMSF025E21Sequence654006540 (5)gb|KJB34790.1|7e-35hypothetical protein B456_006G083900 [Gossypium raimondii]779009979 (4)gb|EYU34172.1|2e-56hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]
JMSF048M19Sequence660006540 (5)gb|KJB34798.1|3e-41hypothetical protein B456_006G084300 [Gossypium raimondii]654009979 (4)gb|EYU34172.1|6e-33hypothetical protein MIMGU_mgv1a025876mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF017C18+                                                                   CTT
                      ____________________________________________________________
consensus                                                                      CTT
 
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rJMSF017C18+          CGCATTGTACATCACGATGTCAAAGCTAGTAAAATTTTGCTAGATGTAGATTTGAACCCA
rJMSF025E21+          CGCATTGTACATCACGATGTCAAAGCTAGTAAAATTTTGCTAGATGTAGATTTGAACCCA
                      ____________________________________________________________
consensus             CGCATTGTACATCACGATGTCAAAGCTAGTAAAATTTTGCTAGATGTAGATTTGAACCCA
 
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rJMSF017C18+          AAAATAACAGATTTTTACATTGCCCGGTTGTTTTCTTTGGATGAAACTCACTGTGAAGAC
rJMSF025E21+          AAAATAACAGATTTTTACATTGCCCGGTTGTTTTCTTTGGATGAAACTCACTGTGAAGAC
                      ____________________________________________________________
consensus             AAAATAACAGATTTTTACATTGCCCGGTTGTTTTCTTTGGATGAAACTCACTGTGAAGAC
 
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rJMSF017C18+          AAAGCTTTGGCGGGAACTCTTGGATATATGGCACCAGAATATCTATTGTGGCGTGAACTT
rJMSF025E21+          AAAGCTTTGGCGGGAACTCTTGGATATATGGCACCAGAATATCTATTGTGGCGTGAACTT
                      ____________________________________________________________
consensus             AAAGCTTTGGCGGGAACTCTTGGATATATGGCACCAGAATATCTATTGTGGCGTGAACTT
 
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rJMSF017C18+          TCTGTTAAATCAGACGTATATAGTTTTGGAGTGTTAATCTTGGAAATTATAAGTGGACAA
rJMSF025E21+          TCTGTTAAATCAGACGTATATAGTTTTGGAGTGTTAATCTTGGAAATTATAAGTGGACAA
                      ____________________________________________________________
consensus             TCTGTTAAATCAGACGTATATAGTTTTGGAGTGTTAATCTTGGAAATTATAAGTGGACAA
 
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rJMSF017C18+          AGATGTTTGGATTATAATAGACCCTTGGCAAATTCTGAGGATCATATGGGATACCTTGCA
rJMSF025E21+          AGATGTTTGGATTATAATAGACCCTTGGCAAATTCTGAGGATCATATGGGATACCTTGCA
                      ____________________________________________________________
consensus             AGATGTTTGGATTATAATAGACCCTTGGCAAATTCTGAGGATCATATGGGATACCTTGCA
 
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rJMSF017C18+          AGTTATGCTTGGACACATTGGAAAAATGGGTGTTCTTCAAATGTGATGGATCCCATGTTA
rJMSF048M19+                GCTTGGACACATCGGAAAAATGGGTGTTCTTCAAATGNGATGGATCCCATGCTA
rJMSF025E21+          AGTTATGCTTGGACACATTGGAAAAATGGGTGTTCTTCAAATGTGATGGATCCCATGTTA
                      ____________________________________________________________
consensus             AGTTATGCTTGGACACATTGGAAAAATGGGTGTTCTTCAAATGTGATGGATCCCATGTTA
 
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rJMSF017C18+          AGACGAATATCAAGTCCAGTGGATGATATAATTAAATGCATCCAAATTGCTTTGCTGTGT
rJMSF048M19+          AGANGAATATCAAGTCCAGTGGATGNTATAATTAAANGCNTCCAAATNGCTTTGCTGTGT
rJMSF004C19+                                                                     T
rJMSF025E21+          AGACGAATATCAAGTCCAGTGGATGATATAATTAAATGCATCCAAATTGCTTTGCTGTGT
                      ____________________________________________________________
consensus             AGACGAATATCAAGTCCAGTGGATGATATAATTAAATGCATCCAAATTGCTTTGCTGTGT
 
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rJMSF017C18+          GTTCAAGAAAAGGCTGAAGATAGACCAACAATGGGAGAAGTTGTTCAAATGCTAAGTAAC
rJMSF048M19+          GTTCANGAAAAGGCTGAAGATAGACCAACAATGGGAGAAGTNGTTCAAATGCTAAGTAAC
rJMSF004C19+          GTTCAAGAAAAGGCTGAAGATAGACCAACAATGGGAGAAGTTGTTCAAATGCTAAGTAAC
rJMSF025E21+          GTTCAAGAAAAGGCTGAAGATAGACCAACAATGGGAGAAGTTGTTCAAATGCTAAGTAAC
                      ____________________________________________________________
consensus             GTTCAAGAAAAGGCTGAAGATAGACCAACAATGGGAGAAGTTGTTCAAATGCTAAGTAAC
 
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rJMSF017C18+          TTATCAATGAGCCTTCCAATACCCTCAACTCCTGGATATTTTTGTCGTATCAAAAATTCA
rJMSF048M19+          TTATCAATGAGCCTTCCAATACCCTCAACTCCTGGATATTTTTGTCGTATCAAAAANTCA
rJMSF004C19+          TTATCAATGAGCCTTCCAATACCCTCAACTCCTGGATATTTTTGTCGTATCAAAAATTCA
rJMSF025E21+          TTATCAATGAGCCTTCCAATACCCTCAACTCCTGGATATTTTTGTCGTATCAAAAATTCA
                      ____________________________________________________________
consensus             TTATCAATGAGCCTTCCAATACCCTCAACTCCTGGATATTTTTGTCGTATCAAAAATTCA
 
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rJMSF017C18+          GATGATTTAGAGGGTTCAATCTATGAGATGTCAACTAGTGATGATGATGATGATTATGAT
rJMSF048M19+          GATGATTTAGAGGGTTCAATCTATGAGATGTCAACTAGTGATGATGATGATGATTATGAT
rJMSF004C19+          GATGATTTAGAGGGTTCAATCTATGAGATGTCAACTAGTGATGATGATGATGATTATGAT
rJMSF025E21+          GATGATTTAGAGGGTTCAATCTATGAGATGTCAACTAGTGATGATGATGATGATTATGAT
                      ____________________________________________________________
consensus             GATGATTTAGAGGGTTCAATCTATGAGATGTCAACTAGTGATGATGATGATGATTATGAT
 
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rJMSF017C18+          TATCGCCCCAGATAGCTTCCCA-ACTGATACCCAACTCATCAATCCAACCACATATTGCG
rJMSF048M19+          TATCGCCCCAGATAGCTTCCCACACTGATACCCAACTCATCAATCCAACCACATATTGCG
rJMSF004C19+          TATCGCCCCAGATAGCTTCCCA-ACTGATACCCAACTCATCAATCCAACCACATATTGCG
rJMSF025E21+          TATCGCCCCAGATAGCTTCCCA-ACTGATACCCAACTCATCAATCCAACCACATATTGCG
                      ____________________________________________________________
consensus             TATCGCCCCAGATAGCTTCCCA-ACTGATACCCAACTCATCAATCCAACCACATATTGCG
 
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rJMSF017C18+          CTTGCTTTGATTTTGGCTTTGTATTGTTTTCCAATTCTGATATTTGTTTTTAGGTAAATC
rJMSF048M19+          CTTGCTTCGATTTTGGCTTTGTATTGTTTTCCAATTCTGATATTTGTTTNTAGGTAAATC
rJMSF004C19+          CTTGCTTTGATTTTGGCTTTGTATTGTTTTCCAATTCTGATATTTGTTTTTAGGTAAATC
rJMSF025E21+          CTTGCTTTGATTTTGGCTTTGTATTGTTTTCCAATTCTGATATTTGTTTTTAGGTAAATC
                      ____________________________________________________________
consensus             CTTGCTTTGATTTTGGCTTTGTATTGTTTTCCAATTCTGATATTTGTTTTTAGGTAAATC
 
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rJMSF017C18+          GAATCTTTTGTTCATTTTACTTTCGTACT                               
rJMSF048M19+          GAATCNTTTGTTCATNNTACTTTCGTACTTAAATACGATTCACTCACATC          
rJMSF004C19+          GAATCTNTTGTTCATTTTACTTTCGTACTTAAATACGATTCACTCACATC          
rJMSF025E21+          GAATCTTTTGTTCATTTTACTTTCGTACTTAAATACGATTCACTCACATCACATGTCCTT
                      ____________________________________________________________
consensus             GAATCTTTTGTTCATTTTACTTTCGTACTTAAATACGATTCACTCACATCACATGTCCTT