Contig 009973:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-                                                         GACGCGCTCCACAA
rJMSF023M06+                                                          CGCGCTCCACAA
                      ____________________________________________________________
consensus                                                           GACGCGCTCCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           TGACGAAGCTTAGGAAGCTGAATCGCCCAACGGGCCATCGACTTTCCATGCTCAGGACGA
rJMSF023M06+          TGACGAAGCTTAGGAAGCTGAATCGCCCAACGGGCCATCGACTTTCCATGCTCAGGACGA
                      ____________________________________________________________
consensus             TGACGAAGCTTAGGAAGCTGAATCGCCCAACGGGCCATCGACTTTCCATGCTCAGGACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           TGGTTTCGCAGTTGGTGAAGCATGAGCGTATAGAGACCACAGTCGCTAAAGCCAAGGAAG
rJMSF023M06+          TGGTTTCGCAGTTGGTGAAGCATGAGCGTATAGAGACCACAGTCGCTAAAGCCAAGGAAG
                      ____________________________________________________________
consensus             TGGTTTCGCAGTTGGTGAAGCATGAGCGTATAGAGACCACAGTCGCTAAAGCCAAGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           TTCGTAGGCTTGCTGATAATATGGTGCAGCTTGGGAAAGAGGGAACTCTATGTGCTGCAA
rJMSF023M06+          TTCGTAGGCTTGCTGATAATATGGTGCAGCTTGGGAAAGAGGGAACTCTATGTGCTGCAA
                      ____________________________________________________________
consensus             TTCGTAGGCTTGCTGATAATATGGTGCAGCTTGGGAAAGAGGGAACTCTATGTGCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           GGCGTGCTGCTGGCTTTGTGCGTGGGGATGATGTTCTTCACAAACTATTTACAGAACTGG
rJMSF023M06+          GGCGTGCTGCTGGCTTTGTGCGTGGGGATGATGTTCTTCACAAACTATTTACAGAACTGG
                      ____________________________________________________________
consensus             GGCGTGCTGCTGGCTTTGTGCGTGGGGATGATGTTCTTCACAAACTATTTACAGAACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           CCTATAGATACAAAGAAAGAGCTGGTGGATACACTAGGTTGTTAAGAACAAGAATACGTG
rJMSF023M06+          CCTATAGATACAAAGAAAGAGCTGGTGGATACACTAGGTTGTTAAGAACAAGAATACGTG
                      ____________________________________________________________
consensus             CCTATAGATACAAAGAAAGAGCTGGTGGATACACTAGGTTGTTAAGAACAAGAATACGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           TGGGTGATGCTGCACCTATGGCCTATATTGAGTTCATTGATAGGGAAAATGAACTTAGAC
rJMSF023M06+          TGGGTGATGCTGCACCTATGGCCTATATTGAGTTCATTGATAGGGAAAATGAACTTAGAC
                      ____________________________________________________________
consensus             TGGGTGATGCTGCACCTATGGCCTATATTGAGTTCATTGATAGGGAAAATGAACTTAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           AATCAAAACCACCCACTCCACAGCTACCACAAAGACCAGCCATGGATCCCTGGACAAAGT
rJMSF023M06+          AATCAAAACCACCCACTCCACAGCTACCACAAAGACCAGCCATGGATCCCTGGACAAAGT
                      ____________________________________________________________
consensus             AATCAAAACCACCCACTCCACAGCTACCACAAAGACCAGCCATGGATCCCTGGACAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           CTCGGCTCAGTAGGCAGTTTGCACCCCCTAAAGAGGAGAAAAGCACAGACTCTGAGAATT
rJMSF023M06+          CTCGGCTCAGTAGGCAGTTTGCACCCCCTAAAGAGGAGAAAAGCACAGACTCTGAGAATT
                      ____________________________________________________________
consensus             CTCGGCTCAGTAGGCAGTTTGCACCCCCTAAAGAGGAGAAAAGCACAGACTCTGAGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           GAAATAAGATATGGAGATTTTGTCGAATCTGCTATTTGGAATGCTGAATTTATTATCTTT
rJMSF023M06+          GAAATAAGATATGGAGATTTTGTCGAATCTGCTATTTGGAATGCTGAATTTATTATCTTT
                      ____________________________________________________________
consensus             GAAATAAGATATGGAGATTTTGTCGAATCTGCTATTTGGAATGCTGAATTTATTATCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           AATGAACGGTTGTCAACAGGGGGGGATATAATGGATGGATAGAATAACGCCNAATGATGA
rJMSF023M06+          AATGAACGGTTGTCAACAGGGGGGGATATAATGGATGGATAGAATAACGCCAAATGATGA
                      ____________________________________________________________
consensus             AATGAACGGTTGTCAACAGGGGGGGATATAATGGATGGATAGAATAACGCCAAATGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023M06-           AATATCAACATTTATCTTTGTTGTTTATAGCAGCTGTGATTG                  
rJMSF023M06+          AATATCAACATTTATCTTTGTTGTTTATAGCAGCTGTGATTGAGGTTTTTAAGAGGTGAG
                      ____________________________________________________________
consensus             AATATCAACATTTATCTTTGTTGTTTATAGCAGCTGTGATTGAGGTTTTTAAGAGGTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023M06+          TTTTGGTGTGAATTTCTCTTGGAAGCTGTCTGTGTAGTGATGCCATTGAGAAGGTAACTT
                      ____________________________________________________________
consensus             TTTTGGTGTGAATTTCTCTTGGAAGCTGTCTGTGTAGTGATGCCATTGAGAAGGTAACTT