Contig 009967:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023A08Sequence681005160 (3)ref|XP_006367000.1|214PREDICTED: uncharacterized protein LOC102582294 [Solanum tuberosum]750009967 (2)ref|XP_009763079.1|243PREDICTED: uncharacterized protein LOC104215037 [Nicotiana sylvestris]
JMSF030N06Sequence638005160 (3)ref|XP_006367000.1|184PREDICTED: uncharacterized protein LOC102582294 [Solanum tuberosum]707009967 (2)ref|XP_009763079.1|238PREDICTED: uncharacterized protein LOC104215037 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF030N06+                                                  AGCTCTCGAGATNGTGAAGG
rJMSF023A08+                                        CACAGCTTGAAGCTCTCGAGATGGTGAAGG
                      ____________________________________________________________
consensus                                           CACAGCTTGAAGCTCTCGAGATGGTGAAGG
 
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rJMSF030N06+          AGCATCTCACCACCGTGGTTGGATGGCGAGCGAATTCCAAAGTCACCGACAACTGGGCGC
rJMSF023A08+          AGCATCTCACCACCGTGGTTGGATGGCGAGCGAATTCCAAAGTCACCGACAACTGGGCGC
                      ____________________________________________________________
consensus             AGCATCTCACCACCGTGGTTGGATGGCGAGCGAATTCCAAAGTCACCGACAACTGGGCGC
 
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rJMSF030N06+          CCACTCAAGTCCAACGCCTCCATCTCTGCCGGGTCTACGCCGCCTCCATTTTGTACGGCT
rJMSF023A08+          CCACTCAAGTCCAACGCCTCCATCTCTGCCGGGTCTACGCCGCCTCCATTTTGTACGGCT
                      ____________________________________________________________
consensus             CCACTCAAGTCCAACGCCTCCATCTCTGCCGGGTCTACGCCGCCTCCATTTTGTACGGCT
 
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rJMSF030N06+          ATTTCCTCAAGTCCGCCTCCCTGAGACACCATCTCGAACAGAGCCTCGACGGCGGTCTCA
rJMSF023A08+          ATTTCCTCAAGTCCGCCTCCCTGAGACACCATCTCGAACAGAGCCTCGACGGCGGTCTCA
                      ____________________________________________________________
consensus             ATTTCCTCAAGTCCGCCTCCCTGAGACACCATCTCGAACAGAGCCTCGACGGCGGTCTCA
 
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rJMSF030N06+          GCCACTTGTCCACGCAAGTCTGTCCTTTAGGGTCCAAGAACGTCGCCCTCAGCCAGGGGG
rJMSF023A08+          GCCACTTGTCCACGCAAGTCTGTCCTTTAGGGTCCAAGAACGTCGCCCTCAGCCAGGGGG
                      ____________________________________________________________
consensus             GCCACTTGTCCACGCAAGTCTGTCCTTTAGGGTCCAAGAACGTCGCCCTCAGCCAGGGGG
 
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rJMSF030N06+          GCGGTGGTATGCAGCCGTTGCTAACCGGCCCGATATCATTCGTCCAGGGCGAGAAGCACG
rJMSF023A08+          GCGGTGGTATGCAGCCGTTGCTAACCGGCCCGATATCATTCGTCCAGGGCGAGAAGCACG
                      ____________________________________________________________
consensus             GCGGTGGTATGCAGCCGTTGCTAACCGGCCCGATATCATTCGTCCAGGGCGAGAAGCACG
 
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rJMSF030N06+          AAACGCTCAAGTCTTACGTGATGGGTTTTGATCCAGAAACGCTGCAAATGTGTGCAAAAC
rJMSF023A08+          AAACGCTCAAGTCTTACGTGATGGGTTTTGATCCAGAAACGCTGCAAATGTGTGCAAAAC
                      ____________________________________________________________
consensus             AAACGCTCAAGTCTTACGTGATGGGTTTTGATCCAGAAACGCTGCAAATGTGTGCAAAAC
 
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rJMSF030N06+          CGAAATCCAAATCGGCCATGAACCTGATCGAGAGGCAAAGCAGTGCGCTGTTTGGGGACG
rJMSF023A08+          CGAAATCCAAATCGGCCATGAACCTGATCGAGAGGCAAAGCAGTGCGCTGTTTGGGGACG
                      ____________________________________________________________
consensus             CGAAATCCAAATCGGCCATGAACCTGATCGAGAGGCAAAGCAGTGCGCTGTTTGGGGACG
 
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rJMSF030N06+          AAAGGTCGGGCCTTCTCCTCGAGAGCAATGAGGTGATTTTGACATCGTTGGCGAGTCTTA
rJMSF023A08+          AAAGGTCGGGCCTTCTCCTCGAGAGCAATGAGGTGATTTTGACATCGTTGGCGAGTCTTA
                      ____________________________________________________________
consensus             AAAGGTCGGGCCTTCTCCTCGAGAGCAATGAGGTGATTTTGACATCGTTGGCGAGTCTTA
 
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rJMSF030N06+          AACGAATAGTGCTCGAGGCCATTGCCTTTGGTTCTTTCCTGTGGGAGACAGAAGAATATG
rJMSF023A08+          AACGAATAGTGCTCGAGGCCATTGCCTTTGGTTCTTTCCTGTGGGAGACAGAAGAATATG
                      ____________________________________________________________
consensus             AACGAATAGTGCTCGAGGCCATTGCCTTTGGTTCTTTCCTGTGGGAGACAGAAGAATATG
 
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rJMSF030N06+          TGAACAACATATATGATCTTGAGGCCAACTAAGCAATGGCTGCCATAGTAGTCTCCTCCA
rJMSF023A08+          TGAACAACATATATGATCTTGAGGCCAACTAAGCAATGGCTGCCATAGTAGTCTCCTCCA
                      ____________________________________________________________
consensus             TGAACAACATATATGATCTTGAGGCCAACTAAGCAATGGCTGCCATAGTAGTCTCCTCCA
 
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rJMSF030N06+          TTTGTGTATAGAGTTTTGTGTTTTTCGTTTGTGTTATGTTGTATAGTGAGGCACCCACAA
rJMSF023A08+          TTTGTGTATAGAGTTTTGTGTTTTTCGTTTGTGTTATGTTGTATAGTGAGGCACCCACAA
                      ____________________________________________________________
consensus             TTTGTGTATAGAGTTTTGTGTTTTTCGTTTGTGTTATGTTGTATAGTGAGGCACCCACAA
 
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rJMSF030N06+          CCCAGAAGCTAATGTAC                                           
rJMSF023A08+          CCCAGAAGCTAATGTACAGAGTCCTCACGGAGGAATTGAGTGATCGAACAGATAATTTTG
                      ____________________________________________________________
consensus             CCCAGAAGCTAATGTACAGAGTCCTCACGGAGGAATTGAGTGATCGAACAGATAATTTTG