Contig 009966:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF018C19-                                                                 GGTGCA
JMSF022O18-                                                                 GGTGCA
                      ____________________________________________________________
consensus                                                                   GGTGCA
 
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JMSF018C19-           ATATTCTCTCTTTAATTGTTGTTTATATATATATATAGGTTATGGGGAAGTGCTGTTCTT
JMSF022O18-           ATATTCTCTCTTTAATTGTTGTTTATATATATATATAGGTTATGGGGAAGTGCTGTTCTT
                      ____________________________________________________________
consensus             ATATTCTCTCTTTAATTGTTGTTTATATATATATATAGGTTATGGGGAAGTGCTGTTCTT
 
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JMSF018C19-           TGTGGGTGCATTTCTTTTTCTTGTTGTGGTGTACAGCAAAGGCTTGGTCTCAACAACGAG
JMSF022O18-           TGTGGGTGCATTTCCTTTTCTTGTTGTGGTGTACAGCAAAGGCTTGGTCTCAACAACGAG
                      ____________________________________________________________
consensus             TGTGGGTGCATTTCTTTTTCTTGTTGTGGTGTACAGCAAAGGCTTGGTCTCAACAACGAG
 
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JMSF018C19-           ACCCATCACAAGTGCCATGCTTCTTCATCTTTGGGGACTCTCTGGTTGACAATGGTAACA
JMSF022O18-           ACCCATCACAAGTGCCATGCTTCTTCATCTTTGGGGACTCTCTGGTTGACAATGGTAACA
                      ____________________________________________________________
consensus             ACCCATCACAAGTGCCATGCTTCTTCATCTTTGGGGACTCTCTGGTTGACAATGGTAACA
 
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JMSF018C19-           ACAATGGCATCCTTACTCTTGCCAGGGCAAACTACATGCCCTACGGAGTCGATTTCCCGT
JMSF022O18-           ACAATGGCATCCTTACTCTTGCCAGGGCAAACTACATGCCCTACGGAGTCGATTTCCCGT
                      ____________________________________________________________
consensus             ACAATGGCATCCTTACTCTTGCCAGGGCAAACTACATGCCCTACGGAGTCGATTTCCCGT
 
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JMSF018C19-           CCGGGACGACTGGCCGGTTCACCAACGGGCGTACTTTCGTCGACATTTTAGCTCAACTTC
JMSF022O18-           CCGGGACGACTGGCCGGTTCACCAACGGGCGTACTTTCGTCGACATTTTAGCTCAACTTC
                      ____________________________________________________________
consensus             CCGGGACGACTGGCCGGTTCACCAACGGGCGTACTTTCGTCGACATTTTAGCTCAACTTC
 
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JMSF018C19-           TAGGGTTTGATAGCTACATTCCACCTTTTGCAAGTGCACGAGGTCGGCAATTACTCCGAG
JMSF022O18-           TAGGGTTTGATAGCTACATTCCACCTTTTGCAAGTGCACGAGGTCGGCAATTACTCCGAG
                      ____________________________________________________________
consensus             TAGGGTTTGATAGCTACATTCCACCTTTTGCAAGTGCACGAGGTCGGCAATTACTCCGAG
 
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JMSF018C19-           GTGTTAATTACGCTTCAGGA                                        
JMSF022O18-           GTGTTAATTACGCTTCAGGACCGCAGGCATCCGAGATGAAACCGGAAACAACCTGGGTGA
                      ____________________________________________________________
consensus             GTGTTAATTACGCTTCAGGACCGCAGGCATCCGAGATGAAACCGGAAACAACCTGGGTGA
 
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JMSF022O18-           TCATATGGCAATGAACCAACAAGTAGAGAATTTTGCAAGGACAGTGGAGGTGCTAAGGAG
                      ____________________________________________________________
consensus             TCATATGGCAATGAACCAACAAGTAGAGAATTTTGCAAGGACAGTGGAGGTGCTAAGGAG
 
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JMSF022O18-           GTTTTTTAGAGGAGATAGCAACTCACTCAATGCCTATCTAAGCAAATGCATATTCTATGT
                      ____________________________________________________________
consensus             GTTTTTTAGAGGAGATAGCAACTCACTCAATGCCTATCTAAGCAAATGCATATTCTATGT
 
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JMSF022O18-           GGGAATGGGAAGCAATGACTATCTTAACAACTACTTCATGCCTGACTTTTATTCAACTCA
rJMSF018C19+              ATGGGAAGCAATGACTATCTTAACAACTACTTCATGCCTGACTTTTATTCAACTCA
                      ____________________________________________________________
consensus             GGGAATGGGAAGCAATGACTATCTTAACAACTACTTCATGCCTGACTTTTATTCAACTCA
 
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JMSF022O18-           TTCCGATTTCACCCCTCAGGCCTATGCTGCTGCCCTTCTCAAGGACTATTTGCAACAATT
rJMSF018C19+          TTCCGATTTCACCCCTCAGGCCTATGCTGCTGCCCTTCTCAAGGACTATTTGCAACAATT
                      ____________________________________________________________
consensus             TTCCGATTTCACCCCTCAGGCCTATGCTGCTGCCCTTCTCAAGGACTATTTGCAACAATT
 
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JMSF022O18-           AACG                                                        
rJMSF018C19+          AACGAACTTGCATGGATTGGGAGCTCGAAAGATAGTTGTGACATCGGTTGGGCAAATCGG
rJMSF022O18+             GAACTTGCATGGATTGGGAGCTCGAAAGATAGTTGTGACATCGGTTGGGCAAATCGG
                      ____________________________________________________________
consensus             AACGAACTTGCATGGATTGGGAGCTCGAAAGATAGTTGTGACATCGGTTGGGCAAATCGG
 
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rJMSF018C19+          ATGCATACCATATGAGCTAGCAAGGTATAATGGCAATGACAGCAAATGCAATGAAGAAAT
rJMSF022O18+          ATGCATACCATATGAGCTAGCAAGGTATAATGGCAATGACAGCAAATGCAATGAAGAAAT
                      ____________________________________________________________
consensus             ATGCATACCATATGAGCTAGCAAGGTATAATGGCAATGACAGCAAATGCAATGAAGAAAT
 
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rJMSF018C19+          CAACAATGCCATAACCATTTTCAACTCTGGGCTCAAGAGGCTTGTGGATCAGTTCAACAA
rJMSF022O18+          CAACAATGCCATAACCATTTTCAACTCTGGGCTCAAGAGGCTTGTGGATCAGTTCAACAA
                      ____________________________________________________________
consensus             CAACAATGCCATAACCATTTTCAACTCTGGGCTCAAGAGGCTTGTGGATCAGTTCAACAA
 
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rJMSF018C19+          GGGGCAGCTGCCTGGATCCAAGTTTGTTTACTTGGATTCATTTGCAAGCTCCAAAGATCT
rJMSF022O18+          GGGGCAGCTGCCTGGATCCAAGTTTGTTTACTTGGATTCATTTGCAAGCTCCAAAGATCT
                      ____________________________________________________________
consensus             GGGGCAGCTGCCTGGATCCAAGTTTGTTTACTTGGATTCATTTGCAAGCTCCAAAGATCT
 
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rJMSF018C19+          TGTTGCCAATGCAAGAAGATATGGATTTGAGGTGGTGGATAAAGGGTGTTGTGGGGTGGG
rJMSF022O18+          TGTTGCCAATGCAAGAAGATATGGATTTGAGGTGGTGGATAAAGGGTGTTGTGGGGTGGG
                      ____________________________________________________________
consensus             TGTTGCCAATGCAAGAAGATATGGATTTGAGGTGGTGGATAAAGGGTGTTGTGGGGTGGG
 
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rJMSF018C19+          GAAGAACAATGGCCAAATAACTTGTCTTCCTCTTCAACAAGCATGTGATGATCGGTCAAA
rJMSF022O18+          GAAGAACAATGGCCAAATAACTTGTCTTCCTCTTCAACAAGCATGTGATGATCGGTCAAA
                      ____________________________________________________________
consensus             GAAGAACAATGGCCAAATAACTTGTCTTCCTCTTCAACAAGCATGTGATGATCGGTCAAA
 
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rJMSF018C19+          GTACATATTTTGGGATGCATTCCATCCCACTGAAGTTGCAAATATTCTTCTAGCCAAGAA
rJMSF022O18+          GTATATATTTTGGGATGCATTCCATCCCACTGAAGTTGCAAATATTCTTCTAGCCAAGAA
                      ____________________________________________________________
consensus             GTATATATTTTGGGATGCATTCCATCCCACTGAAGTTGCAAATATTCTTCTAGCCAAGAA
 
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rJMSF018C19+          AGCTTTCAGTTCAACATCCAAAGTCTTTGCTTATCCCATCAACATTCAACAATTAGCCAT
rJMSF022O18+          AGCTTTCAGTTCAACATCCAAAGTCTTTGCTTATCCCATCAACATTCAACAATTAGCCAT
                      ____________________________________________________________
consensus             AGCTTTCAGTTCAACATCCAAAGTCTTTGCTTATCCCATCAACATTCAACAATTAGCCAT
 
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rJMSF018C19+          GCTCTAGTATTCATATATCCTCATGGATTGTTCTATATCTACATGCAATTTATGTCTTAA
rJMSF022O18+          GCTCTAGTATTCATATATCCTCATGGATTGTTCTATATCTACATGCAATTTATGTCTTAA
                      ____________________________________________________________
consensus             GCTCTAGTATTCATATATCCTCATGGATTGTTCTATATCTACATGCAATTTATGTCTTAA
 
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rJMSF018C19+          TTAGCTCCTATATATGTTTTGAATTGGTTCATGTTTAAGAAAATTGTATTATGATTCTAC
rJMSF022O18+          TTAGCTCCTATATATGTTTTGAATTGGTTCATGTTTAAGAAAATTGTATTATGATTCTAC
                      ____________________________________________________________
consensus             TTAGCTCCTATATATGTTTTGAATTGGTTCATGTTTAAGAAAATTGTATTATGATTCTAC
 
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rJMSF018C19+          TACTCATGTTTGGTTTTCGTTTATCTTTTT-CCTTGTTTCCTTGTTTTGTATGAAG    
rJMSF022O18+          TACTCATGTTTGGTTTTCGTTTATCTTTTTCCCTTGTTTCCTTGTTTTGTATGAAGAGAT
                      ____________________________________________________________
consensus             TACTCATGTTTGGTTTTCGTTTATCTTTTTCCCTTGTTTCCTTGTTTTGTATGAAGAGAT