Contig 009965:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013L14-                                                                     GG
JMSF007F24-                                                                     GG
JMSF022J13-                                                                     GG
                      ____________________________________________________________
consensus                                                                       GG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013L14-           ATTCGTCTTCTCTCTACTAACACCGCCAATTCGTTTTCTCTCTACCTCCCTACTTTCTCT
JMSF007F24-           ATTCGTCTTCTCTCTACTAACACCGCCAATTCGTTTTCTCTCTACCTCCCTACTTTCTCT
JMSF022J13-           ATTCGTCTTCTCTCTACTAACACCGCCAATTCGTTTTCTCTCTACCTCCCTACTTTCTCT
                      ____________________________________________________________
consensus             ATTCGTCTTCTCTCTACTAACACCGCCAATTCGTTTTCTCTCTACCTCCCTACTTTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013L14-           CTGGCGATGTCCGAAACTCCGAATCACAGTGTTCTACCCTTGCCGTTCTTGGTCTCTACT
JMSF007F24-           CTGGCGATGTCCGAAACTCCGAATCACAGTGTTCTACCCTTGCCGTTCTTGGTCTCTACT
JMSF022J13-           CTGGCGATGTCCGAAACTCCGAATCACAGTGTTCTACCCTTGCCGTTCTTGGTCTCTACT
                      ____________________________________________________________
consensus             CTGGCGATGTCCGAAACTCCGAATCACAGTGTTCTACCCTTGCCGTTCTTGGTCTCTACT
 
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JMSF013L14-           TTCCGTTTTGATCCTGTGTTTTTCTACACCCAATCGCACATATAAACAGTTGGTGTTGTG
JMSF007F24-           TTCCGTTTTGATCCTGTGTTTTTCTACACCCAATCGCACATATAAACAGTTGGTGTTGTG
JMSF022J13-           TTCCGTTTTGATCCTGTGTTTTTCTACACCCAATCGCACATATAAACAGTTGGTGTTGTG
                      ____________________________________________________________
consensus             TTCCGTTTTGATCCTGTGTTTTTCTACACCCAATCGCACATATAAACAGTTGGTGTTGTG
 
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JMSF013L14-           TAAATCTTACGTCTAAATTAGTATTTTAGGGTTTATGTGTTTTTCGTTAGCAGATCGGAA
JMSF007F24-           TAAATCTTACGTCTAAATTAGTATTTTAGGGTTTATGTGTTTTTCGTTAGCAGATCGGAA
JMSF022J13-           TAAATCTTACGTCTAAATTAGTATTTTAGGGTTTATGTGTTTTTCGTTAGCAGATCGGAA
                      ____________________________________________________________
consensus             TAAATCTTACGTCTAAATTAGTATTTTAGGGTTTATGTGTTTTTCGTTAGCAGATCGGAA
 
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JMSF013L14-           CTTCTACATGATGTTAA                                           
JMSF007F24-           CTTCTACATGATGTTAATGTTAAGAGTTGGCGAAATCAGAGGAAGGATGTTGAATAAGCT
JMSF022J13-           CTTCTACATGATGTTAATGTTAAGAGTTGGCGAAATCAGAGGAAGGATGTTGAATAAGCT
                      ____________________________________________________________
consensus             CTTCTACATGATGTTAATGTTAAGAGTTGGCGAAATCAGAGGAAGGATGTTGAATAAGCT
 
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JMSF007F24-           AAGTAACCGATCCCTATATCTATTTCTCTATATAATTCATTTTTAATTTCAACACCTATC
JMSF022J13-           AAGTAACCGATCCCTATATCTATTTCTCTATATAATTCATTTTTAATTTCAACACCTATC
                      ____________________________________________________________
consensus             AAGTAACCGATCCCTATATCTATTTCTCTATATAATTCATTTTTAATTTCAACACCTATC
 
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JMSF007F24-           TACAATTTAGTCTAAAAATACTGGTA                                  
JMSF022J13-           TACAATTTAGTCTAAAAATACTGGTAGATGATTTCATCCTATGATTGACCATATTAGGAT
                      ____________________________________________________________
consensus             TACAATTTAGTCTAAAAATACTGGTAGATGATTTCATCCTATGATTGACCATATTAGGAT
 
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JMSF022J13-           TTTTTTTTGATAAATTGTTAACATGCAAGCGAGAGAACAACAATGGTAAAAAAAAATTTG
                      ____________________________________________________________
consensus             TTTTTTTTGATAAATTGTTAACATGCAAGCGAGAGAACAACAATGGTAAAAAAAAATTTG
 
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JMSF022J13-           TACACATGCATCGATTTTTCTATCCCTTTACTCCGTTCATTCATTTTTCTGTATGTTTAC
rJMSF007F24+                                        CTCCGTTCATTCATTTTTCGGTANGTTTAC
                      ____________________________________________________________
consensus             TACACATGCATCGATTTTTCTATCCCTTTACTCCGTTCATTCATTTTTCTGTATGTTTAC
 
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JMSF022J13-           TTTTATATTTCTGTATGTTAGAGTAATAGTCTATTATTCTTATCATTCACTATTTGAATA
rJMSF007F24+          TTTTATATTTCNGTATGTTAGAGTAATAGTCTATTATTCTTATCATNCACTATTTGAATA
rJMSF013L14+                                                             ATTTGAATA
rJMSF022J13+                      GTATGTTAGAGTAATAGTCTATTATTCTTATCATTCACTATTTGAATA
                      ____________________________________________________________
consensus             TTTTATATTTCTGTATGTTAGAGTAATAGTCTATTATTCTTATCATTCACTATTTGAATA
 
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JMSF022J13-           TAATTAGGGTTTTTCTAACTACAGCAGAGTGAATATTTGNGAACTCAATCTAAAGTTTCC
rJMSF007F24+          TAATTAGGGTTTTTCTAACTACAGCAGAGTGAATATTTGTGAACTCAATCTAAAGTTTCC
rJMSF013L14+          TAATTAGGGTTTTTCTAACTACAGCAGAGTGAATATTTGTGAACTCAATCTAAAGTTTCC
rJMSF022J13+          TAATTAGGGTTTTTCTAACTACAGCAGAGTGAATATTTGTGAACTCAATCTAAAGTTTCC
                      ____________________________________________________________
consensus             TAATTAGGGTTTTTCTAACTACAGCAGAGTGAATATTTGTGAACTCAATCTAAAGTTTCC
 
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JMSF022J13-           TCTG                                                        
rJMSF007F24+          TCTGTAAAAAATATATATCTGCGGAGTATTATATTTGAAATGATTTTTTATGCTAACAGA
rJMSF013L14+          TCTGTAAAAAATATATATCTGCGGAGTATTATATTTGAAATGATTTTTTATGCTAACAGA
rJMSF022J13+          TCTGTAAAAAATATATATCTGCGGAGTATTATATTTGAAATGATTTTTTATGCTAACAGA
                      ____________________________________________________________
consensus             TCTGTAAAAAATATATATCTGCGGAGTATTATATTTGAAATGATTTTTTATGCTAACAGA
 
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rJMSF007F24+          TTTAGAAATGATTATGCTGACAAATTATTAGCTCTGGAATGAAATTGCAAATGAACATAA
rJMSF013L14+          TTTAGAAATGATTATGCTGACAAATTATTAGCTCTGGAATGAAATTGCAAATGAACATAA
rJMSF022J13+          TTTAGAAATGATTATGCTGACAAATTATTAGCTCTGGAATGAAATTGCAAATGAACATAA
                      ____________________________________________________________
consensus             TTTAGAAATGATTATGCTGACAAATTATTAGCTCTGGAATGAAATTGCAAATGAACATAA
 
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rJMSF007F24+          AACTAATTGATTCAAGTTTTTCATTTCAGATTCAGAAAAGGAAGGCTATTACCATGGTAA
rJMSF013L14+          AACTAATTGATTCAAGTTTTTCATTTCAGATTCAGAAAAGGAAGGCTATTACCATGGTAA
rJMSF022J13+          AACTAATTGATTCAAGTTTTTCATTTCAGATTCAGAAAAGGAAGGCTATTACCATGGTAA
                      ____________________________________________________________
consensus             AACTAATTGATTCAAGTTTTTCATTTCAGATTCAGAAAAGGAAGGCTATTACCATGGTAA
 
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rJMSF007F24+          GAGGCATATGTAGTGCATAGAAGAAGGCATGATCAAGAAATATGCTTCTGAGGTATTCAA
rJMSF013L14+          GAGGCATATGTAGTGCATAGAAGAAGGCATGATCAAGAAATATGCTTCTGAGGTATTCAA
rJMSF022J13+          GAGGCATATGTAGTGCATAGAAGAAGGCATGATCAAGAAATATGCTTCTGAGGTATTCAA
                      ____________________________________________________________
consensus             GAGGCATATGTAGTGCATAGAAGAAGGCATGATCAAGAAATATGCTTCTGAGGTATTCAA
 
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rJMSF007F24+          CCCAACATCAAACAATTTGAAAGTGTCTGAGAAGGACTTGCTAATATTGCTGGATGCAGT
rJMSF013L14+          CCCAACATCAAACAATTTGAAAGTGTCTGAGAAGGACTTGCTAATATTGCTGGATGCAGT
rJMSF022J13+          CCCAACATCAAACAATTTGAAAGTGTCTGAGAAGGACTTGCTAATATTGCTGGATGCAGT
                      ____________________________________________________________
consensus             CCCAACATCAAACAATTTGAAAGTGTCTGAGAAGGACTTGCTAATATTGCTGGATGCAGT
 
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rJMSF007F24+          TGGACAAAGAGGTTTTTTCCAATGTAAAGGGGAGCCATTCTCAGCCATTGATTGCAAAGA
rJMSF013L14+          TGGACAAAGAGGTTTTTTCCAATGTAAAGGGGAGCCATTCTCAGCCATTGATTGCAAAGA
rJMSF022J13+          TGGACAAAGAGGTTTTTTCCAATGTAAAGGGGAGCCATTCTCAGCCATTGATTGCAAAGA
                      ____________________________________________________________
consensus             TGGACAAAGAGGTTTTTTCCAATGTAAAGGGGAGCCATTCTCAGCCATTGATTGCAAAGA
 
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rJMSF007F24+          ATGGCTGGAAACACGAAAGGGTTAAACGAAGATGGGTGGATTGTTAGTATGCTGAATTTA
rJMSF013L14+          ATGGCTGGAAACACGAAAGGGTTAAACGAAGATGGGTGGATTGTTAGTATGCTGAATTTA
rJMSF022J13+          ATGGCTGGAAACACGAAAGGGTTAAACGAAGATGGGTGGATTGTTAGTATGCTGAATTTA
                      ____________________________________________________________
consensus             ATGGCTGGAAACACGAAAGGGTTAAACGAAGATGGGTGGATTGTTAGTATGCTGAATTTA
 
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rJMSF007F24+          TAGAACACCTTTGAAGGTTGAAGAGTTCGACATGTTGCTGGATTGAAGGCTGTAGAGTTC
rJMSF013L14+          TAGAACACCTTTGAAGGTTGAAGAGTTCGACATGTTGCTGGATTGAAGGCTGTAGAGTTC
rJMSF022J13+          TAGAACACCTTTGAAGGTTGAAGAGTTCGACATGTTGCTGGATTGAAGGCTGTAGAGTTC
                      ____________________________________________________________
consensus             TAGAACACCTTTGAAGGTTGAAGAGTTCGACATGTTGCTGGATTGAAGGCTGTAGAGTTC
 
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rJMSF007F24+          CAAAAAAACGCTGTCATTATTGAAGAGCAATAATAGCTGTGCCCCGGAATCTGAAACGCC
rJMSF013L14+          CAAAAAAACGCTGTCATTATTGAAGAGCAATAATAGCTGTGCCCCGGAATCTGAAACGCC
rJMSF022J13+          CAAAAAAACGCTGTCATTATTGAAGAGCAATAATAGCTGTGCCCCGGAATCTGAAACGCC
                      ____________________________________________________________
consensus             CAAAAAAACGCTGTCATTATTGAAGAGCAATAATAGCTGTGCCCCGGAATCTGAAACGCC
 
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rJMSF007F24+          ACAAAGTAGAAAGCTGCTTTTGAATTGATTTGAATCAATCTTAATTTATTTCTTTAACCA
rJMSF013L14+          ACAAAGTAGAAAGCTGCTTTTGAATTGATTTGAATCAATCTTAATTTATTTCTTTAA-CA
rJMSF022J13+          ACAAAGTAGAAAGCTGCTTTTGAATTGATTTGAATCAATCTTAATTTATTTCTTTAA-CA
                      ____________________________________________________________
consensus             ACAAAGTAGAAAGCTGCTTTTGAATTGATTTGAATCAATCTTAATTTATTTCTTTAA-CA
 
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rJMSF007F24+          TGTGTATTTATTCGGAACAACTTCCCACAACTTGAGAGAACCAAAAC             
rJMSF013L14+          TGTGTATTTATTCGGAACAACTTCCCACAACTTGAGAGAACCAAAAC             
rJMSF022J13+          TGTGTATTTATTCGGAACAACTTCCCACAACTTGAGAGAACCAAAACTGGTGGCCAAGCA
                      ____________________________________________________________
consensus             TGTGTATTTATTCGGAACAACTTCCCACAACTTGAGAGAACCAAAACTGGTGGCCAAGCA