Contig 009964:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022G21Sequence673009964 (2)ref|XP_009772548.1|2e-78PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 [Nicotiana sy765009964 (2)ref|XP_009772550.1|6e-22PREDICTED: B3 domain-containing protein At5g42700-like isoform X2 [Nicotiana sy

Alignment

This contig is upended


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JMSF022G21-                                                                 GATACG
                      ____________________________________________________________
consensus                                                                   GATACG
 
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JMSF022G21-           ACTACCTGGTACTTCTGCTAGTGAGAGAAAGTCCAAAAGACAACCATGGAAACTAAGCAC
                      ____________________________________________________________
consensus             ACTACCTGGTACTTCTGCTAGTGAGAGAAAGTCCAAAAGACAACCATGGAAACTAAGCAC
 
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JMSF022G21-           TCGAATGTTAAACGACCTGTCTCCGAAATCTGTTCGCACAAAGTACGGCTTTCTCATTCT
                      ____________________________________________________________
consensus             TCGAATGTTAAACGACCTGTCTCCGAAATCTGTTCGCACAAAGTACGGCTTTCTCATTCT
 
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JMSF022G21-           CTGTCCACATCGACGCCCGCAGCTTCTTCCTCTAAGACTAAGAGGAAGATGCCATTGGAG
                      ____________________________________________________________
consensus             CTGTCCACATCGACGCCCGCAGCTTCTTCCTCTAAGACTAAGAGGAAGATGCCATTGGAG
 
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JMSF022G21-           AGCAAGGAAAAGCTAGTTTCTAAAAAGCGTAAAATTCTCAAATCTAAGGCTAAACAAGAA
                      ____________________________________________________________
consensus             AGCAAGGAAAAGCTAGTTTCTAAAAAGCGTAAAATTCTCAAATCTAAGGCTAAACAAGAA
 
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JMSF022G21-           AAATCTAATAATCCCAAAAAATCAGAGAGCATTAAACGAAAAAGGGCTACATTTAGTGAC
                      ____________________________________________________________
consensus             AAATCTAATAATCCCAAAAAATCAGAGAGCATTAAACGAAAAAGGGCTACATTTAGTGAC
 
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JMSF022G21-           ATGTACGATGATGTTGAAGCTAAGTTCTCTGTTTTGGAGCGAGCAGAAAGGGTGCTGTCG
                      ____________________________________________________________
consensus             ATGTACGATGATGTTGAAGCTAAGTTCTCTGTTTTGGAGCGAGCAGAAAGGGTGCTGTCG
 
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JMSF022G21-           AGTCTATCAGATGAATTCCCTAGCTTTATAAAGTGTATGCTGCCATCAAATGTTGCTCAT
                      ____________________________________________________________
consensus             AGTCTATCAGATGAATTCCCTAGCTTTATAAAGTGTATGCTGCCATCAAATGTTGCTCAT
 
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JMSF022G21-           GGGTTTTGGCTGCATCTTCCAAAGGCATTCTGTGACATGTATCTTCCGACTTGTGACACC
                      ____________________________________________________________
consensus             GGGTTTTGGCTGCATCTTCCAAAGGCATTCTGTGACATGTATCTTCCGACTTGTGACACC
 
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JMSF022G21-           AATATTATATTGGTAGATGAATGGGGAAATGAATACAAAACGTCTTATCTTCTGGAAAGG
                      ____________________________________________________________
consensus             AATATTATATTGGTAGATGAATGGGGAAATGAATACAAAACGTCTTATCTTCTGGAAAGG
 
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JMSF022G21-           CATGGATTAAGCGCTGGCTGGAGAGCATTTTCAATCTCTCACAGATTACTCAAAGGGGAT
                      ____________________________________________________________
consensus             CATGGATTAAGCGCTGGCTGGAGAGCATTTTCAATCTCTCACAGATTACTCAAAGGGGAT
 
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JMSF022G21-           ATTTTGATCTTTCGTCTGATTGAGCCATGCAAACTAAAGGTAGACATAGTAAGGGTAAAT
rJMSF022G21+                         CTGATTGAGCCATGCAAACTAAAGGTAGACATAGTAAGGGTAAAT
                      ____________________________________________________________
consensus             ATTTTGATCTTTCGTCTGATTGAGCCATGCAAACTAAAGGTAGACATAGTAAGGGTAAAT
 
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JMSF022G21-           GGTCGAG                                                     
rJMSF022G21+          GGTCGAGATGTGGTAGATGCTGCTCTTTGCCTCTTGAAATTTGATGCTAGTGTGAACACA
                      ____________________________________________________________
consensus             GGTCGAGATGTGGTAGATGCTGCTCTTTGCCTCTTGAAATTTGATGCTAGTGTGAACACA
 
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rJMSF022G21+          ACGGATCCGGATCTTTCACGGAAAGACACTCGCAAGCGTAAAAGCTTAGTGAAATTCATA
                      ____________________________________________________________
consensus             ACGGATCCGGATCTTTCACGGAAAGACACTCGCAAGCGTAAAAGCTTAGTGAAATTCATA
 
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rJMSF022G21+          GAGCCTTACATCCATAATGTTTGTAAACCTGAGGCAAATGTTCAAGTTGAAGGCCAGAGT
                      ____________________________________________________________
consensus             GAGCCTTACATCCATAATGTTTGTAAACCTGAGGCAAATGTTCAAGTTGAAGGCCAGAGT
 
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rJMSF022G21+          GCATTGGATTGTTGCTCTCCAAACATTGTGGATCAAGCTGAACATAATAGTAAAGATTCA
                      ____________________________________________________________
consensus             GCATTGGATTGTTGCTCTCCAAACATTGTGGATCAAGCTGAACATAATAGTAAAGATTCA
 
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rJMSF022G21+          GGGTCTGAAGATTTCAAAGGTATGACCTTGCAGGACTCATCTTTGTTTATGCACAAAAAC
                      ____________________________________________________________
consensus             GGGTCTGAAGATTTCAAAGGTATGACCTTGCAGGACTCATCTTTGTTTATGCACAAAAAC
 
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rJMSF022G21+          TCCAAAACTTGTTATCTTGTCTGTGTGATCCCATTTTAGGTTCTGATATTGCCAACCACC
                      ____________________________________________________________
consensus             TCCAAAACTTGTTATCTTGTCTGTGTGATCCCATTTTAGGTTCTGATATTGCCAACCACC
 
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rJMSF022G21+          CGCAATCCAATGAGTTCTGCAGCTCCAAAACTTCGTTTTTGTGCGACCATCCCCGTGATG
                      ____________________________________________________________
consensus             CGCAATCCAATGAGTTCTGCAGCTCCAAAACTTCGTTTTTGTGCGACCATCCCCGTGATG
 
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rJMSF022G21+          GGGTAGCTTGTAGATAGATTGCTATAAAAGAAAGTGCATCTACAGAGGTTGGAATTGATT
                      ____________________________________________________________
consensus             GGGTAGCTTGTAGATAGATTGCTATAAAAGAAAGTGCATCTACAGAGGTTGGAATTGATT
 
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rJMSF022G21+          GAAGCTCAAAAATCAATTGATTTTGCTTCTTCGTGTTACAAGGAAAGCTTCTGAGGGGTG
                      ____________________________________________________________
consensus             GAAGCTCAAAAATCAATTGATTTTGCTTCTTCGTGTTACAAGGAAAGCTTCTGAGGGGTG
 
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rJMSF022G21+          CGTGACGGTTGGGCTCAGTTTTGCAGGAAAACACAGCAAAGAGCCAAAGACTACCTCGGA
                      ____________________________________________________________
consensus             CGTGACGGTTGGGCTCAGTTTTGCAGGAAAACACAGCAAAGAGCCAAAGACTACCTCGGA
 
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rJMSF022G21+          GAGAGAATCTTGGCTGAACCATCTTAAGTGTTTTGGTTTTTGAAACAGTATGGGTTTTTG
                      ____________________________________________________________
consensus             GAGAGAATCTTGGCTGAACCATCTTAAGTGTTTTGGTTTTTGAAACAGTATGGGTTTTTG
 
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rJMSF022G21+          GTAAAGAATACTGTACATCACCCTCCTGTTTAGAGGTAATATATTGTATATACCAGTCAA
                      ____________________________________________________________
consensus             GTAAAGAATACTGTACATCACCCTCCTGTTTAGAGGTAATATATTGTATATACCAGTCAA