Contig 009962:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020M07Sequence680019980ref|XP_009767734.1|81.3PREDICTED: uncharacterized protein LOC104218849 [Nicotiana sylvestris]781009962 (3)ref|XP_009767734.1|233PREDICTED: uncharacterized protein LOC104218849 [Nicotiana sylvestris]
JMSF031M17Sequence630003905 (8)ref|XP_009767734.1|75.9PREDICTED: uncharacterized protein LOC104218849 [Nicotiana sylvestris]704009962 (3)ref|XP_009767734.1|214PREDICTED: uncharacterized protein LOC104218849 [Nicotiana sylvestris]
JMSF050I24Sequence289003905 (8)677009962 (3)ref|XP_009767734.1|182PREDICTED: uncharacterized protein LOC104218849 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020M07+                                                                  CTCT
                      ____________________________________________________________
consensus                                                                     CTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020M07+          AGAAATGCTTTATGNTGGGAAGATGAATGTAAAAGAAAGGATCAAAAGGAACAGTGGCAC
                      ____________________________________________________________
consensus             AGAAATGCTTTATGNTGGGAAGATGAATGTAAAAGAAAGGATCAAAAGGAACAGTGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+                          TTGAGCAGCATCCTTCAAGACCCANCCATGATCNGGTTCTTCTG
rJMSF031M17+                    GAGGGTTTGAGCAGCATCCTTCAAGACCCAACCATGATTTGGTTCTTCTG
rJMSF020M07+          AATACAGGAGGAGGGGTTGAGCAGCATCCTTCAAGACCCAACCATGATTTGGTTCTTCTG
                      ____________________________________________________________
consensus             AATACAGGAGGAGGGTTTGAGCAGCATCCTTCAAGACCCAACCATGATTTGGTTCTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          GGAGAGGCTAGAGAGCATGTGNTTCCTCAAAGGAGAAANGACCCNTGCAATGCAAGATAA
rJMSF031M17+          GGAGAGGCTAGAGAGCATGTGGTTCCTCAAAGGAGAAAAGACCCCTGCAATGCAAGATAA
rJMSF020M07+          GGAGAGGCTAGAGAGCATGTGGTTCCTCAAAGGAGAAAAAACTATGGCAATGCAAGA---
                      ____________________________________________________________
consensus             GGAGAGGCTAGAGAGCATGTGGTTCCTCAAAGGAGAAAAGACCCTTGCAATGCAAGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          TGACACTNGGACTTACNTTNTCCNTGAGGAGAGCAGGGACCCCATTNTNCAGCAAGTGAA
rJMSF031M17+          TGACACTAGGACTTACATTATCCCTGAGGAGAGCAGGGACCCCATTCTGCAGCAAGTGAA
rJMSF020M07+          TGATTCCAGAACTTACATTATCCCTGAAGAGAGCAGGGACCCCATTCTGCAGCAAGTGAA
                      ____________________________________________________________
consensus             TGACACTAGGACTTACATTATCCCTGAGGAGAGCAGGGACCCCATTCTGCAGCAAGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          AGCCATCNTCAGNTACGNCGGCAGCAACCGTGGCTGGGCGGTGTTTAGCCGAGGCCTGGC
rJMSF031M17+          AGCCATCCTCAGCTACGACGGCAGCAACCGTGGCTGGGCGGTGTTTAGCCGAGGCCTGGC
rJMSF020M07+          AGCCATCCTCAGCTACGATGGCAGCAACCGATGCTGGGCAGTGTTTAGCAGAGGGTTGGG
                      ____________________________________________________________
consensus             AGCCATCCTCAGCTACGACGGCAGCAACCGTGGCTGGGCGGTGTTTAGCCGAGGCCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          TGAGATGACCAAAGGGGAAGGCAGCAATGTGGTAAAAGTGTTGAATAACTTTGATAGCTG
rJMSF031M17+          TGAGATGACCAAAGGGGAAGGCAGCAATGTGGTAAAAGTGTTGAATAACTTTGATAGCTG
rJMSF020M07+          TGAAATGACCAAAGGGGAAGGCAGCAATGTGGTAAAAGTGTTGAGCAACTATGATAGCTG
                      ____________________________________________________________
consensus             TGAGATGACCAAAGGGGAAGGCAGCAATGTGGTAAAAGTGTTGAATAACTTTGATAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          GAGACATGAAGTGACTGATGAGAATGCATTTATCCCTGCACTGGATAAACAGCTTCGTGG
rJMSF031M17+          GAGACATGAAGTGACTGATGAGAATGCATTTATCCCTGCACTGGATAAACAGCTTCGTGG
rJMSF020M07+          GAAGCATGAAGTGACTGATGTGAATGCGTTTATCCCTGCTCTGGATAAGCAGCTTCGTGG
                      ____________________________________________________________
consensus             GAGACATGAAGTGACTGATGAGAATGCATTTATCCCTGCACTGGATAAACAGCTTCGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          GCNGNATACTAAGCACCACTGCACCCGCATGGTTGTGCCGGCGGCGGTGGGACACTACCC
rJMSF031M17+          GCTGTATACTAAGCACCACTGCACCCGCATGGTTGTGCCGGCGGCGGTGGGACACTACCC
rJMSF020M07+          GCTGTATACTAAGCACCACTGCACCCGCATGGTGGTGCCGGCGGCGGTGGGGCACTACCC
                      ____________________________________________________________
consensus             GCTGTATACTAAGCACCACTGCACCCGCATGGTTGTGCCGGCGGCGGTGGGACACTACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          GGAGACGGTGGCTTGCGTGGAGTGTGGGCGTTCCATGGAGAAGTTCTTCATGTATAGCTG
rJMSF031M17+          GGAGACGGTGGCTTGCGTGGAGTGTGGGCGTTCCATGGAGAAGTTCTTCATGTATAGCTG
rJMSF020M07+          GGAGACGGTGGCTTGCGTGGAGTGCGGGCGAACCATGGAAAAGTTCTTCATGTATAGTTG
                      ____________________________________________________________
consensus             GGAGACGGTGGCTTGCGTGGAGTGTGGGCGTTCCATGGAGAAGTTCTTCATGTATAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050I24+          CTGCCTGGATGAGTATGA                                          
rJMSF031M17+          CTGCCTGGATGAGTATGA                                          
rJMSF020M07+          CTGCCTGGATGAGTATGAAAATTAAATTCTGCCACAAATTAAATGCCATCCAGACCGGTC
                      ____________________________________________________________
consensus             CTGCCTGGATGAGTATGAAAATTAAATTCTGCCACAAATTAAATGCCATCCAGACCGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020M07+          CGCTAATTCCATCCAAATAAAGATCTTCGTTCTATCTTCAGATCCATTATTGGTGTCTCC
                      ____________________________________________________________
consensus             CGCTAATTCCATCCAAATAAAGATCTTCGTTCTATCTTCAGATCCATTATTGGTGTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020M07+          TCCACCATACTTTTTGTTACAGTGTGTTATGTAAAATAAAGAATGTAAGAAAGATGCAGG
                      ____________________________________________________________
consensus             TCCACCATACTTTTTGTTACAGTGTGTTATGTAAAATAAAGAATGTAAGAAAGATGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020M07+          ATATGATGCATCATTTCACTGGTTTTCCTCTATTATTAGCACTTAGATTGTTGTATGGGA
                      ____________________________________________________________
consensus             ATATGATGCATCATTTCACTGGTTTTCCTCTATTATTAGCACTTAGATTGTTGTATGGGA