Contig 009960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN014E24Sequence615009960 (4)ref|XP_006359857.1|8e-118PREDICTED: 60S ribosomal protein L18-2-like [Solanum tuberosum]
JMSF011O09Sequence222009960 (4)ref|XP_002874343.1|9e-3460S ribosomal protein L18 [Arabidopsis lyrata subsp. lyrata] gb|EFH50602.1| 60S 130023466
JMSF020E24Sequence692009960 (4)ref|XP_006359857.1|1e-117PREDICTED: 60S ribosomal protein L18-2-like [Solanum tuberosum]730009960 (4)ref|XP_006359857.1|2e-117PREDICTED: 60S ribosomal protein L18-2-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF020E24-                                                            ATCTGATTTT
                      ____________________________________________________________
consensus                                                               ATCTGATTTT
 
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JMSF020E24+                                      CTGTCCAAACCTATCACTCACATAACACAGAAA
rJMSF020E24-          GAAAGGAACTATGGGTTTATGACTAAACTGTCCAAACCTATCACTCACATAACACAGAAA
                      ____________________________________________________________
consensus             GAAAGGAACTATGGGTTTATGACTAAACTGTCCAAACCTATCACTCACATAACACAGAAA
 
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JMFN014E24+                                AAAATTTAAATTTCAGCACTTACAGCTGAAGAACTAAGC
JMSF020E24+           AATTATCCCTGAGATGATGACAAAATTTAAATTTCAGCACTTACAGCTGAAGAACTAAGC
rJMSF020E24-          AATTATCCCTGAGATGATGACAAAATTTAAATTTCAGCACTTACAGCTGAAGAACTAAGC
                      ____________________________________________________________
consensus             AATTATCCCTGAGATGATGACAAAATTTAAATTTCAGCACTTACAGCTGAAGAACTAAGC
 
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JMFN014E24+           AATTTAAAATACCTAAATTTTATAGCCTCTGCTATTTCTCTTTCCCCTGGCTCTCTCAAA
JMSF020E24+           AATTTAAAATACCTAAATTTTATAGCCTCTGCTATTTCTCTTTCCCCTGGCTCTCTCAAA
rJMSF020E24-          AATTTAAAATACCTAAATTTTATAGCCTCTGCTATTTCTCTTTCCCCTGGCTCTCTCAAA
                      ____________________________________________________________
consensus             AATTTAAAATACCTAAATTTTATAGCCTCTGCTATTTCTCTTTCCCCTGGCTCTCTCAAA
 
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JMFN014E24+           TTTTCTGCCCTTGGACCTAACATAGGGCTTGATATGGCTGTGTGGCACTCCAGGAGCTCT
JMSF020E24+           TTTTCTGCCCTTGGACCTAACATAGGGCTTGATATGGCTGTGTGGCACTCCAGGAGCTCT
rJMSF020E24-          TTTTCTGCCCTTGGACCTAACATAGGGCTTGATATGGCTGTGTGGCACTCCAGGAGCTCT
                      ____________________________________________________________
consensus             TTTTCTGCCCTTGGACCTAACATAGGGCTTGATATGGCTGTGTGGCACTCCAGGAGCTCT
 
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JMFN014E24+           GCCAAAGTGCTTCACGGCCTCACGGGAGTTTTTAGGGCCCCGTAGAAGCACCGTGTTCTG
JMSF020E24+           GCCAAAGTGCTTCACGGCCTCACGGGAGTTTTTAGGGCCCCGTAGAAGCACCGTGTTCTG
rJMSF020E24-          GCCAAAGTGCTTCACGGCCTCACGGGAGTTTTTAGGGCCCCGTAGAAGCACCGTGTTCTG
                      ____________________________________________________________
consensus             GCCAAAGTGCTTCACGGCCTCACGGGAGTTTTTAGGGCCCCGTAGAAGCACCGTGTTCTG
 
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JMFN014E24+           GCCAAGAGGAGCTCGGAGAGCAAGCTGATCAAAAGTCAAGCACTCACCCCCTGCTTTCTC
JMSF020E24+           GCCAAGAGGAGCTCGGAGAGCAAGCTGATCAAAAGTCAAGCACTCACCCCCTGCTTTCTC
rJMSF020E24-          GCCAAGAGGAGCTCGGAGAGCAAGCTGATCAAAAGTCAAGCACTCACCCCCTGCTTTCTC
                      ____________________________________________________________
consensus             GCCAAGAGGAGCTCGGAGAGCAAGCTGATCAAAAGTCAAGCACTCACCCCCTGCTTTCTC
 
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JMFN014E24+           AATTCTAGCTCTTGCTGTCTCAGTGAATCTCAGTGCAGCTACTTTCATTTTGGGCACTTC
JMSF020E24+           AATTCTAGCTCTTGCTGTCTCAGTGAATCTCAGTGCAGCTACTTTCATTTTGGGCACTTC
rJMSF020E24-          AATTCTAGCTCTTGCTGTCTCAGTGAATCTCAGTGCAGCTACTTTCATTTTGGGCACTTC
                      ____________________________________________________________
consensus             AATTCTAGCTCTTGCTGTCTCAGTGAATCTCAGTGCAGCTACTTTCATTTTGGGCACTTC
 
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JMFN014E24+           ATAAGCTCTAGTATCATCAGTCACTGTCCCAACAAGAACAGCAATCTTATCCTCCTTTCC
JMSF020E24+           ATAAGCTCTAGTATCATCAGTCACTGTCCCAACAAGAACAGCAATCTTATCCTCCTTTCC
rJMSF020E24-          ATAAGCTCTAGTATCATCAGTCACTGTCCCAACAAGAACAGCAATCTTATCCTCCTTTCC
                      ____________________________________________________________
consensus             ATAAGCTCTAGTATCATCAGTCACTGTCCCAACAAGAACAGCAATCTTATCCTCCTTTCC
 
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JMFN014E24+           TTGGATGAATTGAATCAACCTGGAGAGAGACAGTGGAGCCTTGTTGGTTTTGCTCATAAA
JMSF020E24+           TTGGATGAATTGAATCAACCTGGAGAGAGACAGTGGAGCCTTGTTGGTTTTGCTCATAAA
JMSF011O09+                            ACCTGGAGAGAGACAGTGGAGCCTTGTTGGTTTTGCTCATAAA
rJMSF020E24-          TTGGATGAATTGAATCAACCTGGAGAGAGACAGTGGAGCCTTGTTGGTTTTGCTCATAAA
                      ____________________________________________________________
consensus             TTGGATGAATTGAATCAACCTGGAGAGAGACAGTGGAGCCTTGTTGGTTTTGCTCATAAA
 
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JMFN014E24+           TAGCCTCTTCAGTATCGCAGCATTAAACTTGCTCTCCGTTCTCCGCACCAGAAATCGATA
JMSF020E24+           TAGCCTCTTCAGTATCGCAGCATTAAACTTGCTCTCCGTTCTCCGCACCAGAAATCGATA
JMSF011O09+           TAGCCTCTTCAGTATCGCAGCATTAAACTTGCTCTCCGTTCTCCGCACCAGAAATCGATA
rJMSF020E24-          TAGCCTCTTCAGTATCGCAGCATTAAACTTGCTCTCCGTTCTCCGCACCAGAAATCGATA
                      ____________________________________________________________
consensus             TAGCCTCTTCAGTATCGCAGCATTAAACTTGCTCTCCGTTCTCCGCACCAGAAATCGATA
 
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JMFN014E24+           CAACTTGACGAGCAGCTTGAGATAGACATCGTCGGACTTCGGGGCAGTGCGTTTGGTCTG
JMSF020E24+           CAACTTGACGAGCAGCTTGAGATAGACATCGTCGGACTTCGGGGCAGTGCGTTTGGTCTG
JMSF011O09+           CAACTTGACGAGCAGCTTGAGATAGACATCGTCGGACTTCGGGGCAGTGCGTTTGGTCTG
rJMSF020E24-          CAACTTGACGAGCAGCTTGAGATAGACATCGTCGGACTTCGGGGCAGTGCGTTTGGTCTG
                      ____________________________________________________________
consensus             CAACTTGACGAGCAGCTTGAGATAGACATCGTCGGACTTCGGGGCAGTGCGTTTGGTCTG
 
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JMFN014E24+           CTTGCTTTTGCCGCCGGCGACCAAATCTATACCCAT                        
JMSF020E24+           CTTGCTTTTGCCGCCGGCGACCAAATCTATACCCATTGCTACTGCAGCTGCTCCTGA   
JMSF011O09+           CTTGCTTTTGCCGCCGGCGACCAAATCTATACCCATTGCTACTGCAGCTGCTCCTGA   
rJMSF020E24-          CTTGCTTTTGCCGCCGGCGACCAAATCTATACCCATTGCTACTGCAGCTGCTCCTGAACC
                      ____________________________________________________________
consensus             CTTGCTTTTGCCGCCGGCGACCAAATCTATACCCATTGCTACTGCAGCTGCTCCTGAACC