Contig 009959:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020E11Sequence758009959 (2)ref|XP_009613221.1|1e-55PREDICTED: F-box protein CPR30-like [Nicotiana tomentosiformis]
JMSF027K09Sequence730009959 (2)ref|XP_009613221.1|7e-55PREDICTED: F-box protein CPR30-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF027K09+                                       TTCCNTGCGCTTGTACTCCCAGGCGTTTGGG
rJMSF020E11+                                ATTCCGATTCCTTGCGCTTGTACTCCCAGGCGTTTGGG
                      ____________________________________________________________
consensus                                   ATTCCGATTCCTTGCGCTTGTACTCCCAGGCGTTTGGG
 
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rJMSF027K09+          TTTGGGACTGATCCCGTGTCTAACGAGTACAAGGTTGTTCGGGTTAGCGATTTCTGGGAT
rJMSF020E11+          TTTGGGACTGATCCCGTGTCTAACGAGTACAAGGTTGTTCGGGTTAGCGATTTCTGGGAT
                      ____________________________________________________________
consensus             TTTGGGACTGATCCCGTGTCTAACGAGTACAAGGTTGTTCGGGTTAGCGATTTCTGGGAT
 
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rJMSF027K09+          AACTCCACCGACAATTGGCGCAATCCCATTGTTTCTGTTTACTCTCAGGGCACTGATTCC
rJMSF020E11+          AACTCCACCGACAATTGGCGCAATCCCATTGTTTCTGTTTACTCTCAGGGCACTGATTCC
                      ____________________________________________________________
consensus             AACTCCACCGACAATTGGCGCAATCCCATTGTTTCTGTTTACTCTCAGGGCACTGATTCC
 
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rJMSF027K09+          TGGAGGCATTTTGATTGTGAGGGCTTCAGGGCGAGGAACATGGTGAAATCCTGCGGCACA
rJMSF020E11+          TGGAGGCATTTTGATTGTGAGGGCTTCAGGGCGAGGAACATGGTGAAATCCTGCGGCACA
                      ____________________________________________________________
consensus             TGGAGGCATTTTGATTGTGAGGGCTTCAGGGCGAGGAACATGGTGAAATCCTGCGGCACA
 
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rJMSF027K09+          ACATTCTTGGACGGGTGCTTTTACTGGAAATCGGTTGATAATCGCAGAGTGTTTGAGTTT
rJMSF020E11+          ACATTCTTGGACGGGTGCTTTTACTGGAAATCGGTTGATAATCGCAGAGTGTTTGAGTTT
                      ____________________________________________________________
consensus             ACATTCTTGGACGGGTGCTTTTACTGGAAATCGGTTGATAATCGCAGAGTGTTTGAGTTT
 
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rJMSF027K09+          GATATGAGGAAAGAGGAGTTCCAAGAGATTCAAACCCCGGGATTGTTTAAATCCAAGCAG
rJMSF020E11+          GATATGAGGAAAGAGGAGTTCCAAGAGATTCAAACCCCGGGATTGTTTAAATCCAAGCAG
                      ____________________________________________________________
consensus             GATATGAGGAAAGAGGAGTTCCAAGAGATTCAAACCCCGGGATTGTTTAAATCCAAGCAG
 
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rJMSF027K09+          GGCGATTTGGCCTTGTATGATGGGTGTGTTGCGATGTTCTTTCATGATTTTGTTGACAAG
rJMSF020E11+          GGCGATTTGGCCTTGTATGATGGGTGTGTTGCGATGTTCTTTCATGATTTTGTTGACAAG
                      ____________________________________________________________
consensus             GGCGATTTGGCCTTGTATGATGGGTGTGTTGCGATGTTCTTTCATGATTTTGTTGACAAG
 
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rJMSF027K09+          ACAAAGTTGTGCGTTGACATTTGGGCTGTGGACAGTCGAAAATGTTGGGACATGAAGGTG
rJMSF020E11+          ACAAAGTTGTGCGTTGACATTTGGGCTGTGGACAGTCGAAAATGTTGGGACATGAAGGTG
                      ____________________________________________________________
consensus             ACAAAGTTGTGCGTTGACATTTGGGCTGTGGACAGTCGAAAATGTTGGGACATGAAGGTG
 
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rJMSF027K09+          AGAATTGGACCTTTTGTGAGCATTAAAAGGCCACTTGGGTATGGTGAGAATGGTGAAATC
rJMSF020E11+          AGAATTGGACCTTTTGTGAGCATTAAAAGGCCACTTGGGTATGGTGAGAATGGTGAAATC
                      ____________________________________________________________
consensus             AGAATTGGACCTTTTGTGAGCATTAAAAGGCCACTTGGGTATGGTGAGAATGGTGAAATC
 
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rJMSF027K09+          TTTCTTCAAAATGCTTTCTCAAAGGTTGCTGTTGTAGAGGCTGCTGGGTCACAGGAAGCT
rJMSF020E11+          TTTCTTCAAAATGCTTTCTCAAAGGTTGCTGTTGTAGAGGCTGCTGGGTCACAGGAAGCT
                      ____________________________________________________________
consensus             TTTCTTCAAAATGCTTTCTCAAAGGTTGCTGTTGTAGAGGCTGCTGGGTCACAGGAAGCT
 
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rJMSF027K09+          AAGGTTTTTGGTCCTATGAAGAAATTACAAGGTGGATGGTTGTCGGCTGTGTTTGATTAC
rJMSF020E11+          AAGGTTTTTGGTCCTATGAAGAAATTACAAGGTGGATGGTTGTCGGCTGTGTTTGATTAC
                      ____________________________________________________________
consensus             AAGGTTTTTGGTCCTATGAAGAAATTACAAGGTGGATGGTTGTCGGCTGTGTTTGATTAC
 
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rJMSF027K09+          AAGGAGAGTCTTATTTCAATTCAACCAAACACCACTAAACACCTATTCTCCCATTTTCCA
rJMSF020E11+          AAGGAGAGTCTTATTTCAATTCAACCAAACACCACTAAACACCTATTCTCCCATTTTCCA
                      ____________________________________________________________
consensus             AAGGAGAGTCTTATTTCAATTCAACCAAACACCACTAAACACCTATTCTCCCATTTTCCA
 
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rJMSF027K09+          GATTTCTAGAAAAATTATGTCAGTGTTTCCATTGTCATT                     
rJMSF020E11+          GATTTCTAGAAAAATTATGTCAGTGTTTCCATTGTCATTTTAAGTTAATGTTCATAGATA
                      ____________________________________________________________
consensus             GATTTCTAGAAAAATTATGTCAGTGTTTCCATTGTCATTTTAAGTTAATGTTCATAGATA