| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007K20 | Sequence | 561 | 003082 (3) | ref|XP_004250947.1| | 4e-83 | PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic | 797 | 009958 (3) | ref|XP_004250947.1| | 2e-83 | PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic |
| JMSF020C21 | Sequence | 693 | 003082 (3) | ref|XP_004250947.1| | 5e-121 | PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic | 761 | 009958 (3) | ref|XP_010313279.1| | 6e-83 | PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Solanum lycopersic |
| JMSF050O09 | Sequence | 605 | 003082 (3) | ref|XP_004250947.1| | 2e-102 | PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic | 737 | 009958 (3) | ref|XP_010313279.1| | 3e-83 | PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Solanum lycopersic |
This contig is upended
. : . : . : . : . : . :
rJMFF007K20+ TTATGCAGTAGCCAAAGCATTATATCCNCNTCCAGTT
____________________________________________________________
consensus TTATGCAGTAGCCAAAGCATTATATCCNCNTCCAGTT
. : . : . : . : . : . :
rJMFF007K20+ TATCCTCCTGTGATGCCAACAATTCCCGAAACTGACGTAAATAATACTACTGTTTTTGTT
rJMSF050O09+ CCGAAACTGACGTAAATAATACTACTGTTTTTGTT
rJMSF020C21+ CCGAAACTGACGTAAATAATACTACTGTTTTTGTT
____________________________________________________________
consensus TATCCTCCTGTGATGCCAACAATTCCCGAAACTGACGTAAATAATACTACTGTTTTTGTT
. : . : . : . : . : . :
rJMFF007K20+ GGCAATCTGGATCCAAATGTTACAGAAGAGGAACTGAGACAAATCTTTTTGCAATTTGGG
rJMSF050O09+ GGCAATCTGGATCCAAATGTTACAGAAGAGGAACTGAGACAAATCTTTTTGCAATTTGGG
rJMSF020C21+ GGCAATCTGGATCCAAATGTTACAGAAGAGGAACTGAGACAAATCTTTTTGCAATTTGGG
____________________________________________________________
consensus GGCAATCTGGATCCAAATGTTACAGAAGAGGAACTGAGACAAATCTTTTTGCAATTTGGG
. : . : . : . : . : . :
rJMFF007K20+ GAAATTATTTATGTCAAGATTGTTGCTGCCAAAGCATGCGCGTTTATACAGTTTGCTGCA
rJMSF050O09+ GAAATTATTTATGTCAAGATTGTTGCTGCCAAAGCATGCGCGTTTATACAGTTTGCTGCA
rJMSF020C21+ GAAATTATTTATGTCAAGATTGTTGCTGCCAAAGCATGCGCGTTTATACAGTTTGCTGCA
____________________________________________________________
consensus GAAATTATTTATGTCAAGATTGTTGCTGCCAAAGCATGCGCGTTTATACAGTTTGCTGCA
. : . : . : . : . : . :
rJMFF007K20+ AGGCCATCTGCTGAAGAAGCAATTCAGAGGATGAATGGTACTGTGATTGGTCAACAAATA
rJMSF050O09+ AGGCCATCTGCTGAAGAAGCAATTCAGAGGATGAATGGTACTGTGATTGGTCAACAAATA
rJMSF020C21+ AGGCCATCTGCTGAAGAAGCAATTCAGAGGATGAATGGTACTGTGATTGGTCAACAAATA
____________________________________________________________
consensus AGGCCATCTGCTGAAGAAGCAATTCAGAGGATGAATGGTACTGTGATTGGTCAACAAATA
. : . : . : . : . : . :
rJMFF007K20+ GTTCGTGTTTACTGGGGTAGGAGTCCAACTGTTAAACAGGACGCTGGTATCTGGGGTCAG
rJMSF050O09+ GTTCGTGTTTACTGGGGTAGGAGTCCAACTGTTAAACAGGACGCTGGTATCTGGGGTCAG
rJMSF020C21+ GTTCGTGTTTACTGGGGTAGGAGTCCAACTGTTAAACAGGACGCTGGTATCTGGGGTCAG
____________________________________________________________
consensus GTTCGTGTTTACTGGGGTAGGAGTCCAACTGTTAAACAGGACGCTGGTATCTGGGGTCAG
. : . : . : . : . : . :
rJMFF007K20+ GCAGCTGATGCAAGCCAATGGAGTGCATATTATGGTTATGGACAGGGATATGATGCATAT
rJMSF050O09+ GCAGCTGATGCAAGCCAATGGAGTGCATATTATGGTTATGGACAGGGATATGATGCATAT
rJMSF020C21+ GCAGCTGATGCAAGCCAATGGAGTGCATATTATGGTTATGGACAGGGATATGATGCATAT
____________________________________________________________
consensus GCAGCTGATGCAAGCCAATGGAGTGCATATTATGGTTATGGACAGGGATATGATGCATAT
. : . : . : . : . : . :
rJMFF007K20+ GCTTATGGAGCCACTCAAGATCCTTCAGTTTATGCATATAGCGCTTATCCTGGTTATGCT
rJMSF050O09+ GCTTATGGAGCCACTCAAGATCCTTCAGTTTATGCATATAGCGCTTATCCTGGTTATGCT
rJMSF020C21+ GCTTATGGAGCCACTCAAGATCCTTCAGTTTATGCATATAGCGCTTATCCTGGTTATGCT
____________________________________________________________
consensus GCTTATGGAGCCACTCAAGATCCTTCAGTTTATGCATATAGCGCTTATCCTGGTTATGCT
. : . : . : . : . : . :
rJMFF007K20+ CAATACCCTCAACAGGGTGAAGGAGCTCAAGATATTGCAACCTTGACTGCTACTGTGCCG
rJMSF050O09+ CAATACCCTCAACAGGGTGAAGGAGCTCAAGATATTGCAACCTTGACTGCTACTGTGCCG
rJMSF020C21+ CAATACCCTCAACAGGGTGAAGGAGCTCAAGATATTGCAACCTTGACTGCTACTGTGCCG
____________________________________________________________
consensus CAATACCCTCAACAGGGTGAAGGAGCTCAAGATATTGCAACCTTGACTGCTACTGTGCCG
. : . : . : . : . : . :
rJMFF007K20+ GCTGTGGACCAAAGGGAGGAACGGCAGGACCCTTTGGCTACACCTGATGTTGACAGGTTA
rJMSF050O09+ GCTGTGGACCAAAGGGAGGAACGGCAGGACCCTTTGGCTACACCTGATGTTGACAGGTTA
rJMSF020C21+ GCTGTGGACCAAAGGGAGGAACGGCAGGACCCTTTGGCTACACCTGATGTTGACAGGTTA
____________________________________________________________
consensus GCTGTGGACCAAAGGGAGGAACGGCAGGACCCTTTGGCTACACCTGATGTTGACAGGTTA
. : . : . : . : . : . :
rJMFF007K20+ AATGCCTCTTACCTCGCTGTCCATGCAAGTTCCGTCTTAGGCCGGCCGCTATGGCAAAAG
rJMSF050O09+ AATGCCTCTTACCTCGCTGTCCATGCAAGTTCCGTCTTAGGCCGGCCGCTATGGCAAAAG
rJMSF020C21+ AATGCCTCTTACCTCGCTGTCCATGCAAGTTCCGTCTTAGGCCGGCCGCTATGGCAAAAG
____________________________________________________________
consensus AATGCCTCTTACCTCGCTGTCCATGCAAGTTCCGTCTTAGGCCGGCCGCTATGGCAAAAG
. : . : . : . : . : . :
rJMFF007K20+ ACATCATCACTTTCAGAGCAAGCTTAGAATTCATCCCTCACAGAGATCCTATGGTTTCAA
rJMSF050O09+ ACATCATCACTTTCAGAGCAAGCTTAGAATTCATCCCTCACAGAGATCCTATGGTTTCAA
rJMSF020C21+ ACATCATCACTTTCAGAGCAAGCTTAGAATTCATCCCTCACAGAGATCCTATGGTTTCAA
____________________________________________________________
consensus ACATCATCACTTTCAGAGCAAGCTTAGAATTCATCCCTCACAGAGATCCTATGGTTTCAA
. : . : . : . : . : . :
rJMFF007K20+ TTTTGTAATGACGACATTTGGACATTATAACGGCTGAGATTTTCCCTTATTGTAGGATAT
rJMSF050O09+ TTTTGTAATGACGACATTTGGACATTATAACGGCTGAGATTTTCCCTTATTGTAGGATAT
rJMSF020C21+ TTTTGTAATGACGACATTTGGACATTATAACGGCTGAGATTTTCCCTTATTGTAGGATAT
____________________________________________________________
consensus TTTTGTAATGACGACATTTGGACATTATAACGGCTGAGATTTTCCCTTATTGTAGGATAT
. : . : . : . : . : . :
rJMFF007K20+ AACTATATAAGAAACCCTTGTTTACTATGTATGCTACTTC
rJMSF050O09+ AACTATATAAGAAACCCTTGTTTACTATGTATGCTACTTC
rJMSF020C21+ AACTATATAAGAAACCCTTGTTTACTATGTATGCTACTTCCATGATTCTCCAGTGAAATG
____________________________________________________________
consensus AACTATATAAGAAACCCTTGTTTACTATGTATGCTACTTCCATGATTCTCCAGTGAAATG