Contig 009956:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001F02Sequence609009956 (6)gb|EMT31824.1|3e-48Histone H4 [Aegilops tauschii]573009956 (6)gb|EMT31824.1|2e-48Histone H4 [Aegilops tauschii]
JMFF025L02Sequence604009956 (6)gb|EMT31824.1|3e-48Histone H4 [Aegilops tauschii]576009956 (6)gb|EMT31824.1|2e-48Histone H4 [Aegilops tauschii]
JMSF019O11Sequence458009956 (6)gb|EMT31824.1|5e-49Histone H4 [Aegilops tauschii]605009956 (6)gb|EMT31824.1|3e-48Histone H4 [Aegilops tauschii]

Alignment

This contig is upended


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JMFF001F02-                     GTCGTTGCATTGTGAGCTCGAGGTCATTCTTCGTCTTCTATACATTTCTC
rJMFF001F02+                    GTCGTTGCATTGTGAGCTCGAGGTCATTCTTCGTCTTCTATACATTTCTC
JMFF025L02-                       CGTTGCATTGTGAGCTCGAGGTCATTCTTCGTCTTCTATACATTTCTC
rJMFF025L02+                      CGTTGCATTGTGAGCTCGAGGTCATTCTTCGTCTTCTATACATTTCTC
                      ____________________________________________________________
consensus                       GTCGTTGCATTGTGAGCTCGAGGTCATTCTTCGTCTTCTATACATTTCTC
 
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JMFF001F02-           AGATTTAGGAATTTGTAGAGTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
rJMFF001F02+          AGATTTAGGAATTTGTAGAGTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
JMFF025L02-           AGATTTAGGAATTTGTAGAGTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
JMSF019O11-                              GTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
rJMFF025L02+          AGATTTAGGAATTTGTAGAGTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
rJMSF019O11+                             GTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
                      ____________________________________________________________
consensus             AGATTTAGGAATTTGTAGAGTGTCGGTTCAGAATGTCGGGTCGGGGAAAAGGAGGCAAGG
 
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JMFF001F02-           GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
rJMFF001F02+          GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
JMFF025L02-           GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
JMSF019O11-           GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
rJMFF025L02+          GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
rJMSF019O11+          GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
                      ____________________________________________________________
consensus             GATTGGGAAAGGGAGGAGCGAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGTA
 
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JMFF001F02-           TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
rJMFF001F02+          TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
JMFF025L02-           TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
JMSF019O11-           TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
rJMFF025L02+          TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
rJMSF019O11+          TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
                      ____________________________________________________________
consensus             TAACTAAGCCGGCCATTCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCC
 
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JMFF001F02-           TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
rJMFF001F02+          TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
JMFF025L02-           TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
JMSF019O11-           TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
rJMFF025L02+          TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
rJMSF019O11+          TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
                      ____________________________________________________________
consensus             TCATATACGAGGAGACTCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATG
 
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JMFF001F02-           CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
rJMFF001F02+          CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
JMFF025L02-           CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
JMSF019O11-           CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
rJMFF025L02+          CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
rJMSF019O11+          CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
                      ____________________________________________________________
consensus             CCGTTACCTACACCGAGCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATG
 
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JMFF001F02-           CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGG                       
rJMFF001F02+          CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGGCGGTTGAGCGTTTTGGGCTGAAC
JMFF025L02-           CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGG                       
JMSF019O11-           CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGGCGGTTGAGCGTTTTGGGCTGAAC
rJMFF025L02+          CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGGCGGTTGAGCGTTTTGGGCTGAAC
rJMSF019O11+          CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGGCGGTTGAGCGTTTTGGGCTGAAC
                      ____________________________________________________________
consensus             CGCTGAAAAGGCAGGGTCGGACTCTTTACGGGTTCGGCGGTTGAGCGTTTTGGGCTGAAC
 
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rJMFF001F02+          CGTTTGTACTGGTTTTTGTTATGAGTCTTGCTGTCAAGAAAATTAGAACTGTCAACAATG
JMSF019O11-           CGTTTGTACTGGTTTTTGTTATGAGTCTTGCTG                           
rJMFF025L02+          CGTTTGTACTGGTTTTTGTTATGAGTCTTGCTGTCAAGAAAATTAGAACTGTCAACAATG
rJMSF019O11+          CGTTTGTACTGGTTTTTGTTATGAGTCTTGCTGTCAAGAAAATTAGAACTGTCAACAATG
                      ____________________________________________________________
consensus             CGTTTGTACTGGTTTTTGTTATGAGTCTTGCTGTCAAGAAAATTAGAACTGTCAACAATG
 
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rJMFF001F02+          GCTCTCTGCTTTCTGACTTTTTTGTAAATACTCTTCAGTGTTGGGTATTGTCTTCTTAGG
rJMFF025L02+          GCTCTCTGCTTTCTGACTTTTTTGTAAATACTCTTCAGTGTTGGGTATTGTCTTCTTAGG
rJMSF019O11+          GCTCTCTGCTTTCTGACTTTTTTGTAAATACTCTTCAGTGTTGGGTATTGTCTTCTTAGG
                      ____________________________________________________________
consensus             GCTCTCTGCTTTCTGACTTTTTTGTAAATACTCTTCAGTGTTGGGTATTGTCTTCTTAGG
 
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rJMFF001F02+          TAGGTAGTAGTTTGTTCACTTTACTGGTGATGTTGAAT                      
rJMFF025L02+          TAGGTAGTAGTTTGTTCACTTTACTGGTGATGTTGAATGCTTCATG              
rJMSF019O11+          TAGGTAGTAGTTTGTTCACTTTACTGGTGATGTTGAATGCTTCATGTTTGTTTCTGAATG
                      ____________________________________________________________
consensus             TAGGTAGTAGTTTGTTCACTTTACTGGTGATGTTGAATGCTTCATGTTTGTTTCTGAATG