Contig 009952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019H04Sequence255009952 (2)762009952 (2)ref|XP_006353400.1|4e-88PREDICTED: protein LURP-one-related 14-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF019H04-                                                           GGAGTTCAAATT
                      ____________________________________________________________
consensus                                                             GGAGTTCAAATT
 
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JMSF019H04-           AGTCAAACCTCACACAGACAAGATGAAGTTTCGTTGAAGATTTGGATGATCACTCTTCTC
                      ____________________________________________________________
consensus             AGTCAAACCTCACACAGACAAGATGAAGTTTCGTTGAAGATTTGGATGATCACTCTTCTC
 
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JMSF019H04-           CATTCTACACGCCCTTTTCCGCCTCTCCCTTAATCAAATCAAAAACCCTTCGATTCTCTG
                      ____________________________________________________________
consensus             CATTCTACACGCCCTTTTCCGCCTCTCCCTTAATCAAATCAAAAACCCTTCGATTCTCTG
 
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JMSF019H04-           CTATGATTTTCTTAGTTTTCTGCTAGACGGAACCTTAAACCTTAAACAGTTCGTTTTTTG
rJMSF019H04+                                               AACCTTAAACAGTTCGTTTTTTG
                      ____________________________________________________________
consensus             CTATGATTTTCTTAGTTTTCTGCTAGACGGAACCTTAAACCTTAAACAGTTCGTTTTTTG
 
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JMSF019H04-           GAAACGTTTTTCAATGTTCAAACCTGAGATAAGGCACGATGTTCCTCTCATCCCTGTCGT
rJMSF019H04+          GAAACGTTTTTCAATGTTCAAACCTGAGATAAGGCACGATGTTCCTCTCATCCCTGTCGT
                      ____________________________________________________________
consensus             GAAACGTTTTTCAATGTTCAAACCTGAGATAAGGCACGATGTTCCTCTCATCCCTGTCGT
 
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JMSF019H04-           CGG                                                         
rJMSF019H04+          CGGCGACGCCTTCTGCTTCCCTTACCTCGTTGACTTGACTGTCAGGAAGGGGATCCTCGG
                      ____________________________________________________________
consensus             CGGCGACGCCTTCTGCTTCCCTTACCTCGTTGACTTGACTGTCAGGAAGGGGATCCTCGG
 
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rJMSF019H04+          CGTCACCGGATTGCGCTTCGATGTCTCCGATGATAACGGCGGTTCTCTCCTCGGAGTCCA
                      ____________________________________________________________
consensus             CGTCACCGGATTGCGCTTCGATGTCTCCGATGATAACGGCGGTTCTCTCCTCGGAGTCCA
 
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rJMSF019H04+          CGGGAAGCTCTGGCAGTTCCGGCGGAAAAAACGAACCATTTCCGATCCCTCCGGCTTCCC
                      ____________________________________________________________
consensus             CGGGAAGCTCTGGCAGTTCCGGCGGAAAAAACGAACCATTTCCGATCCCTCCGGCTTCCC
 
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rJMSF019H04+          GATCCTCACTATGCGCTCAAAGGTTCTTGCACTGAGAAATGTGTGGTCTGTTTACAAAGG
                      ____________________________________________________________
consensus             GATCCTCACTATGCGCTCAAAGGTTCTTGCACTGAGAAATGTGTGGTCTGTTTACAAAGG
 
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rJMSF019H04+          AGAGAGTTCAGATGAAAATGATGTGATATACAGTGTTCAAGAATCTAAAGTTCTTCAGAT
                      ____________________________________________________________
consensus             AGAGAGTTCAGATGAAAATGATGTGATATACAGTGTTCAAGAATCTAAAGTTCTTCAGAT
 
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rJMSF019H04+          GAAAATCAGACTTGATGTTTTCATGGCTGGCAACAGGGGAGAGATCTGTAATTTCCATGT
                      ____________________________________________________________
consensus             GAAAATCAGACTTGATGTTTTCATGGCTGGCAACAGGGGAGAGATCTGTAATTTCCATGT
 
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rJMSF019H04+          TAAGGGCTCCTACACTTCTCAGAACTTCAAAGTCTACAAAGGAGATACTTTGATTGCCGA
                      ____________________________________________________________
consensus             TAAGGGCTCCTACACTTCTCAGAACTTCAAAGTCTACAAAGGAGATACTTTGATTGCCGA
 
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rJMSF019H04+          GGTGAAGGAGAAAGTGAAGATAGGTTACTTCTTTAAGGGCATAGAGAAGTTTGAAGTAAG
                      ____________________________________________________________
consensus             GGTGAAGGAGAAAGTGAAGATAGGTTACTTCTTTAAGGGCATAGAGAAGTTTGAAGTAAG
 
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rJMSF019H04+          AGTCTATCCTGGCGCCGATTATGCTTTCGTTGTATCGCTACTCGTAATACTAAACGATAT
                      ____________________________________________________________
consensus             AGTCTATCCTGGCGCCGATTATGCTTTCGTTGTATCGCTACTCGTAATACTAAACGATAT
 
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rJMSF019H04+          TGATGGAGGGTCATGAGTGCTTTGGTTTTAATCCTTACACAAGAAAAATAAAATACAAAA
                      ____________________________________________________________
consensus             TGATGGAGGGTCATGAGTGCTTTGGTTTTAATCCTTACACAAGAAAAATAAAATACAAAA
 
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rJMSF019H04+          AATCGTATATGTGAAATTACAGTTTTGGACAGTGCTGACAAGGCTTTTGTTACAGAATCT
                      ____________________________________________________________
consensus             AATCGTATATGTGAAATTACAGTTTTGGACAGTGCTGACAAGGCTTTTGTTACAGAATCT