Contig 009950:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018O04Sequence498009950 (2)761009950 (2)emb|CAE05450.3|3e-11OSJNBa0073E02.10 [Oryza sativa Japonica Group]

Alignment

This contig is upended


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JMSF018O04-                                          GACTGATGATTTATTGAGAATCAATACAC
                      ____________________________________________________________
consensus                                            GACTGATGATTTATTGAGAATCAATACAC
 
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JMSF018O04-           AACACAAACAGTTTCAGTTTCCTGAGTTCATCTGGTATCAGATTAGCCGAAGGTTTCTTA
                      ____________________________________________________________
consensus             AACACAAACAGTTTCAGTTTCCTGAGTTCATCTGGTATCAGATTAGCCGAAGGTTTCTTA
 
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JMSF018O04-           TTCCTAGCTATGACGTCTCTTCTTCCTACTGGTAGCAGTGCAGAGGTATCTTCGGAATGC
                      ____________________________________________________________
consensus             TTCCTAGCTATGACGTCTCTTCTTCCTACTGGTAGCAGTGCAGAGGTATCTTCGGAATGC
 
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JMSF018O04-           ACTACGGTGGCCTCGTCGGTCGTCACTACTAGTTAGCCGGTCATTCTTGCTCAGCTCTCG
                      ____________________________________________________________
consensus             ACTACGGTGGCCTCGTCGGTCGTCACTACTAGTTAGCCGGTCATTCTTGCTCAGCTCTCG
 
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JMSF018O04-           GACTTCCTTTTTGCCTAGCAGTTTATTTGTGCTGAGGATTTCTTGCCAACTATGGAGGTT
                      ____________________________________________________________
consensus             GACTTCCTTTTTGCCTAGCAGTTTATTTGTGCTGAGGATTTCTTGCCAACTATGGAGGTT
 
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JMSF018O04-           TCGACTGGTGGTTCTTCGTCGATTACGATGGTGGCTCGCCGAAGTGGCTGTCAGTCAGGT
                      ____________________________________________________________
consensus             TCGACTGGTGGTTCTTCGTCGATTACGATGGTGGCTCGCCGAAGTGGCTGTCAGTCAGGT
 
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JMSF018O04-           AAAGGTGGTCGCTGGCGTGGATGGAGTGGCTTTCGTGGTGGCCGTGTTAGACATGGTCAC
                      ____________________________________________________________
consensus             AAAGGTGGTCGCTGGCGTGGATGGAGTGGCTTTCGTGGTGGCCGTGTTAGACATGGTCAC
 
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JMSF018O04-           AGTGGATAAGCGGGTTTTCCTCGCTGCCAATCTACCGGAGTCACGAGCACACTTCCGTGA
rJMSF018O04+                             CTCGCTGCCNATCTACCGGAGTCACGAGCACACTTCCGTGA
                      ____________________________________________________________
consensus             AGTGGATAAGCGGGTTTTCCTCGCTGCCAATCTACCGGAGTCACGAGCACACTTCCGTGA
 
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JMSF018O04-           CTTACTTCAGGTGATATACGGACAATCCAGCTCCCCCNAGCTAATTAGG           
rJMSF018O04+          CTTACTTCAGGTGATATACGGACAATCCAGCTCCCCCAAGCTAATTAGGCTGCTGTTGTT
                      ____________________________________________________________
consensus             CTTACTTCAGGTGATATACGGACAATCCAGCTCCCCCAAGCTAATTAGGCTGCTGTTGTT
 
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rJMSF018O04+          GGTGTTTTAGATGAGGGCGCATCTTTTTCTGGTGGTTTTTCTTGGTTTCTAGATATNGGA
                      ____________________________________________________________
consensus             GGTGTTTTAGATGAGGGCGCATCTTTTTCTGGTGGTTTTTCTTGGTTTCTAGATATNGGA
 
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rJMSF018O04+          GCCACACGTCACACCACCCCAGCTGCCAGTGCTTTAATGGAGTCGGATGAATATCACGGT
                      ____________________________________________________________
consensus             GCCACACGTCACACCACCCCAGCTGCCAGTGCTTTAATGGAGTCGGATGAATATCACGGT
 
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rJMSF018O04+          GGTGAGACTTTGTTGGTCCGTAATGGAACAGGTTTGGTTATTTCCCGTCTTGGTCGTACT
                      ____________________________________________________________
consensus             GGTGAGACTTTGTTGGTCCGTAATGGAACAGGTTTGGTTATTTCCCGTCTTGGTCGTACT
 
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rJMSF018O04+          TCAATTTCCACTCCCTCTCATTCTCTTAAAGTGTCTTATGTTTTATATGTTCCTAGTTTA
                      ____________________________________________________________
consensus             TCAATTTCCACTCCCTCTCATTCTCTTAAAGTGTCTTATGTTTTATATGTTCCTAGTTTA
 
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rJMSF018O04+          TCTAATTCATTGTTGTTAGTTTTGTGTTTTGCGTCTGAATTTCATCCCTCTTTTTTTGTT
                      ____________________________________________________________
consensus             TCTAATTCATTGTTGTTAGTTTTGTGTTTTGCGTCTGAATTTCATCCCTCTTTTTTTGTT
 
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rJMSF018O04+          GTGAATGACCTCGCAACCAAGGAAATCCTGCTCAAAGGTCCTAGTTCGGGTGGTCTTTAT
                      ____________________________________________________________
consensus             GTGAATGACCTCGCAACCAAGGAAATCCTGCTCAAAGGTCCTAGTTCGGGTGGTCTTTAT
 
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rJMSF018O04+          TCGTTGCTAGTTTTTTGGGTAGTCTCTTATTGCGTTTCTATCTGCTCGCGCTTCTTCTGC
                      ____________________________________________________________
consensus             TCGTTGCTAGTTTTTTGGGTAGTCTCTTATTGCGTTTCTATCTGCTCGCGCTTCTTCTGC
 
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rJMSF018O04+          TATCTAGCACAACTGTTTGGGGCACCCATACTATCATCATTTGAGTTGGGTCCTATCGGC
                      ____________________________________________________________
consensus             TATCTAGCACAACTGTTTGGGGCACCCATACTATCATCATTTGAGTTGGGTCCTATCGGC
 
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rJMSF018O04+          CTGTCCGATTAGCAAATTAGATATTAGTTCTTCTTTCTTGTGTTCTGCTTGCCAGTTAGG
                      ____________________________________________________________
consensus             CTGTCCGATTAGCAAATTAGATATTAGTTCTTCTTTCTTGTGTTCTGCTTGCCAGTTAGG
 
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rJMSF018O04+          AAATCATCTAGATTCCTTTTGTCTCGTGTTGAGTCGTCCAGATTCCTTNTGTCTCGTGTT
                      ____________________________________________________________
consensus             AAATCATCTAGATTCCTTTTGTCTCGTGTTGAGTCGTCCAGATTCCTTNTGTCTCGTGTT
 
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rJMSF018O04+          AGTCGTCCAGTTCAAATGTACTTGATCTTATTTACCATAGATATTTGGGCCCTGCGCCTA
                      ____________________________________________________________
consensus             AGTCGTCCAGTTCAAATGTACTTGATCTTATTTACCATAGATATTTGGGCCCTGCGCCTA