Contig 009948:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018I20Sequence379009948 (6)781009948 (6)ref|XP_009800623.1|177PREDICTED: uncharacterized protein LOC104246511 [Nicotiana sylvestris]
JMSF029N05Sequence676009948 (6)ref|XP_004237233.1|138PREDICTED: uncharacterized protein LOC101251874 [Solanum lycopersicum]761009948 (6)ref|XP_009800623.1|177PREDICTED: uncharacterized protein LOC104246511 [Nicotiana sylvestris]
JMSF036B10Sequence697009948 (6)ref|XP_010090643.1|2e-40hypothetical protein L484_017445 [Morus notabilis] gb|EXB40307.1| hypothetical p694009948 (6)ref|XP_009800623.1|150PREDICTED: uncharacterized protein LOC104246511 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF018I20-                                    TGCACAGACATTTTCGCAAAGATATAGATAGAGCT
JMSF029N05-                                     GCACAGACATTTTCGCAAAGATATAGATAGAGCT
JMSF036B10-                                     GCACAGACATTTTCGCAAAGATATAGATAGAGCT
                      ____________________________________________________________
consensus                                      TGCACAGACATTTTCGCAAAGATATAGATAGAGCT
 
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JMSF018I20-           CTGTTTCAGAGGATTTCTCTCACATCCTTCTCTTTCTCTCTCTTGAATCTTGATCGGAAC
JMSF029N05-           CTGTTTCAGAGGATTTCTCTCACATCCTTCTCTTTCTCTCTCTTGAATCTTGATCGGAAC
JMSF036B10-           CTGTTTCAGAGGATTTCTCTCACATCCTTCTCTTTCTCTCTCTTGAATCTTGATCGGAAC
                      ____________________________________________________________
consensus             CTGTTTCAGAGGATTTCTCTCACATCCTTCTCTTTCTCTCTCTTGAATCTTGATCGGAAC
 
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JMSF018I20-           ACCACCGCCGCGTCTTCATCGTTTCTCTCTCTGATAAGGAAGAGAAACAGACAAAGAATT
JMSF029N05-           ACCACCGCCGCGTCTTCATCGTTTCTCTCTCTGATAAGGAAGAGAAACAGACAAAGAATT
JMSF036B10-           ACCACCGCCGCGTCTTCATCGTTTCTCTCTCTGATAAGGAAGAGAAACAGACAAAGAATT
                      ____________________________________________________________
consensus             ACCACCGCCGCGTCTTCATCGTTTCTCTCTCTGATAAGGAAGAGAAACAGACAAAGAATT
 
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JMSF018I20-           CTCGGCGAAGAATTCTGCAACAGTGCGTGGGATTTTTTGCAAAAGGATAAACATCAATAT
JMSF029N05-           CTCGGCGAAGAATTCTGCAACAGTGCGTGGGATTTTTTGCAAAAGGATAAACATCAATAT
JMSF036B10-           CTCGGCGAAGAATTCTGCAACAGTGCGTGGGATTTTTTGCAAAAGGATAAACATCAATAT
                      ____________________________________________________________
consensus             CTCGGCGAAGAATTCTGCAACAGTGCGTGGGATTTTTTGCAAAAGGATAAACATCAATAT
 
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JMSF018I20-           CCAATCCTCCTGGAGAAAAAATTTTATCCGTTTGCCTCGATTTCCGCAATATTTCTATTT
JMSF029N05-           CCAATCCTCCTGGAGAAAAAATTTTATCCGTTTGCCTCGATTTCCGCAATATTTCTATTT
JMSF036B10-           CCAATCCTCCTGGAGAAAAAATTTTATCCGTTTGCCTCGATTTCCGCAATATTTCTATTT
                      ____________________________________________________________
consensus             CCAATCCTCCTGGAGAAAAAATTTTATCCGTTTGCCTCGATTTCCGCAATATTTCTATTT
 
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JMSF018I20-           CTTTGATAATTGTTCGTTTTTTCCCTTTCGCTAACAACTTTTATCGGAATCTCGTTTCGC
JMSF029N05-           CTTTGATAATTGTTCGTTTTTTCCCTTTCGCTAACAACTTTTATCGGAATCTCGTTTCGC
JMSF036B10-           CTTTGATAATTGTTCGTTTTTTCCCTTTCGCTAACAACTTTTATCGGAATCTCGTTTCGC
rJMSF018I20+                                                                    GC
                      ____________________________________________________________
consensus             CTTTGATAATTGTTCGTTTTTTCCCTTTCGCTAACAACTTTTATCGGAATCTCGTTTCGC
 
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JMSF018I20-           GGATTGGAAAAAGAAAGTGAGAAGATGATGCGAAGGCAGCAGGA                
JMSF029N05-           GGATTGGAAAAAGAAAGTGAGAAGATGATGCGAAGGCAGCAGGATCAGCATTCTAGGGTT
JMSF036B10-           GGATTGGAAAAAGAAAGTGAGAAGATGATGCGAAGGCAGCAGGATCAGCATTCTAGGGTT
rJMSF029N05+                GAAAAAGAAAGTGAGAAGATGATGCGAAGGCAGCAGGATCAGCATTCTAGGGTT
rJMSF018I20+          GGATTGGAAAAAGAAAGTGAGAAGATGATGCGAAGGCAGCAGGATCAGCATTCTAGGGTT
                      ____________________________________________________________
consensus             GGATTGGAAAAAGAAAGTGAGAAGATGATGCGAAGGCAGCAGGATCAGCATTCTAGGGTT
 
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JMSF029N05-           CTCCACGAGCTCTCGTCTATGGTGCTGAACATTATCCGATCCCCGCCGACGCCGATTGAG
JMSF036B10-           CTCCACGAGCTCTCGTCTATGGTGCTGAACATTATCCGATCCCCGCCGACGCCGATTGAG
rJMSF029N05+          CTCCACGAGCTCTCGTCTATGGTGCTGAACATTATCCGATCCCCGCCGACGCCGATTGAG
rJMSF036B10+          CTCCACGAGCTCTCGTCTATGGTGCTGAACATTATCCGATCCCCGCCGACGCCGATTGAG
rJMSF018I20+          CTCCACGAGCTCTCGTCTATGGTGCTGAACATTATCCGATCCCCGCCGACGCCGATTGAG
                      ____________________________________________________________
consensus             CTCCACGAGCTCTCGTCTATGGTGCTGAACATTATCCGATCCCCGCCGACGCCGATTGAG
 
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JMSF029N05-           TTCAACGACGAGTCTCCGGCGGATGATACGGTGGTGCCGGGCCCGTCGGCGGCGGTAGCG
JMSF036B10-           TTCAACGACGAGTCTCCGGCGGATGATACGGTGGTGCCGGGCCCGTCGGCGGCGGTAGCG
rJMSF029N05+          TTCAACGACGAGTCTCCGGCGGATGATACGGTGGTGCCGGGCCCGTCGGCGGCGGTAGCG
rJMSF036B10+          TTCAACGACGAGTCTCCGGCGGATGATACGGTGGTGCCGGGCCCGTCGGCGGCGGTAGCG
rJMSF018I20+          TTCAACGACGAGTCTCCGGCGGATGATACGGTGGTGCCGGGCCCGTCGGCGGCGGTAGCG
                      ____________________________________________________________
consensus             TTCAACGACGAGTCTCCGGCGGATGATACGGTGGTGCCGGGCCCGTCGGCGGCGGTAGCG
 
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JMSF029N05-           GCGAGGATTCAGCCGATTCTGCAGCAGATAACGCCAGCCGGATTTGCGTCGTTTCTTTTG
JMSF036B10-           GCGAGGATTCAGCCGATTCTGCAGCAGATAACGCCAGCCGGATTTGCGTCGTTTCTTTTG
rJMSF029N05+          GCGAGGATTCAGCCGATTCTGCAGCAGATAACGCCAGCCGGATTTGCGTCGTTTCTTTTG
rJMSF036B10+          GCGAGGATTCAGCCGATTCTGCAGCAGATAACGCCAGCCGGATNTGCGTCGTTTCTTTTG
rJMSF018I20+          GCGAGGATTCAGCCGATTCTGCAGCAGATAACGCCAGCCGGATTTGCGTCGTTTCTTTTG
                      ____________________________________________________________
consensus             GCGAGGATTCAGCCGATTCTGCAGCAGATAACGCCAGCCGGATTTGCGTCGTTTCTTTTG
 
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JMSF029N05-           GGGATTTCGTTGGCCTTGATGCTGTGTGGATCGGTGACTTTCTTCATTGGATTCATGATG
JMSF036B10-           GGGATTTCGTTGGCCTTGATGCTGTGTGGATCGGTGACTTTCTTCATTGGATTCATGATG
rJMSF029N05+          GGGATTTCGTTGGCCTTGATGCTGTGTGGATCGGTGACTTTCTTCATTGGATTCATGATG
rJMSF036B10+          GGGATTTCGTTGGCCTTGATGCTGTGTGGATCGGTGACTTTCTTCATTGGATTCATGATG
rJMSF018I20+          GGGATTTCGTTGGCCTTGATGCTGTGTGGATCGGTGACTTTCTTCATTGGATTCATGATG
                      ____________________________________________________________
consensus             GGGATTTCGTTGGCCTTGATGCTGTGTGGATCGGTGACTTTCTTCATTGGATTCATGATG
 
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JMSF029N05-           ATGCCTTGGGTGCTTGGCCTGGCCATGGNTTTATACTTCGT                   
JMSF036B10-           ATGCCTTGGGTGCTTGGCCTGGCCATGGTTTTATACTTCGTCGGGGTCGTTGCGAGCT  
rJMSF029N05+          ATGCCTTGGGTGCTTGGCCTGGCCATGGTTTTATACTTCGTCGGGGTCGTTGCGAGCTTG
rJMSF036B10+          ATGCCTTGGGTGCTTGGCCTGGCCATGGTTTTATACTTCGTCGGGGTCGTTGCGAGCTTG
rJMSF018I20+          ATGCCTTGGGTGCTTGGCCTGGCCATGGTTTTATACTTCGTCGGGGTCGTTGCGAGCTTG
                      ____________________________________________________________
consensus             ATGCCTTGGGTGCTTGGCCTGGCCATGGTTTTATACTTCGTCGGGGTCGTTGCGAGCTTG
 
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rJMSF029N05+          TCCATGCTTGGACGCACCATTCTCTGCCATTTATCGTCCTCGTCAAGGAAAGACGCTCAC
rJMSF036B10+          TCCATGCTCGGACGCACCATTCTCTGCCATTTATCGTCCTCGTCAAGGAAAGACGCTCAC
rJMSF018I20+          TCCATGCTTGGACGCACCATTCTCTGCCATTTATCGTCCTCGTCAAGGAAAGACGCTCAC
                      ____________________________________________________________
consensus             TCCATGCTTGGACGCACCATTCTCTGCCATTTATCGTCCTCGTCAAGGAAAGACGCTCAC
 
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rJMSF029N05+          TCCTGGAAGCTTATGTGAAGCAAGCATTTGGATGAAACAGCATGATATGTTTTTGTTTTG
rJMSF036B10+          TCCTGGAAGCTTATGTGAAGCAAGCATTTGGATGAAACAGCATGATATGTTTTTGTTTTG
rJMSF018I20+          TCCTGGAAGCTTATGTGAAGCAAGCATTTGGATGAAACAGCATGATATGTTTTTGTTTTG
                      ____________________________________________________________
consensus             TCCTGGAAGCTTATGTGAAGCAAGCATTTGGATGAAACAGCATGATATGTTTTTGTTTTG
 
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rJMSF029N05+          GGTAGGCGGTGCTTCCTGCAAAGCTAATTGGATTAACGCAGGGGCTGTGGATATGTATCT
rJMSF036B10+          GGTAGGCGGTGCTTCCTGCAAAGCTAATTGGATTAACGCAGGGGCTGTGGATATGTATCT
rJMSF018I20+          GGTAGGCGGTGCTTCCTGCAAAGCTAATTGGATTAACGCAGGGGCTGTGGATATGTATCT
                      ____________________________________________________________
consensus             GGTAGGCGGTGCTTCCTGCAAAGCTAATTGGATTAACGCAGGGGCTGTGGATATGTATCT
 
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rJMSF029N05+          ACATATATAGCAAACTTTACAAGGGACTTCTACGGCATAAAGTTATTATTTTGATCTTTT
rJMSF036B10+          ACATATATAGCAAACTTTACAAGGGACTTCTACGGCATAAAGTTATTATTTTGATCTTTT
rJMSF018I20+          ACATATATAGCAAACTTTACAAGGGACTTCTACGGCATAAAGTTATTATTTTGATCTTTT
                      ____________________________________________________________
consensus             ACATATATAGCAAACTTTACAAGGGACTTCTACGGCATAAAGTTATTATTTTGATCTTTT
 
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rJMSF029N05+          GATCGAATTCTACACTCGAAGAAGCTGCGGGAAAGAATGTCAGATTAGCCATTACCACAA
rJMSF036B10+          GATCGAATTCTACACTCGAAGAAGCTGCGGGAAAGAATGTCAGATTAGCCATTACCACAA
rJMSF018I20+          GATCGAATTCTACACTCGAAGAAGCTGCGGGAAAGAATGTCAGATTAGCCATTACCACAA
                      ____________________________________________________________
consensus             GATCGAATTCTACACTCGAAGAAGCTGCGGGAAAGAATGTCAGATTAGCCATTACCACAA
 
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rJMSF029N05+          ACATATATATTTTGTCATCTTGTTCTGTAATCTTGTTATGCGTTTGTCTCTCAGAAACAT
rJMSF036B10+          ACATATATATTTTGTCATCTTGTTCTGTAATCTTGTTATGCGTTTGTCTCTCAGAAACAT
rJMSF018I20+          ACATATATATTTTGTCATCTTGTTCTGTAATC-TGTTATGCGTTTGTCTCTCAGAAACAT
                      ____________________________________________________________
consensus             ACATATATATTTTGTCATCTTGTTCTGTAATCTTGTTATGCGTTTGTCTCTCAGAAACAT
 
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rJMSF029N05+          AGATGTAATTCTTTCCTCCACTTCATCTGTT                             
rJMSF036B10+          AGATGTAATTCTTTCCTCCACTTCATCTGTT                             
rJMSF018I20+          AGATGTAATTCTTTCCTCCACTTCATCTGTTTGATTATTATGTCATGAATGAAAACGAAG
                      ____________________________________________________________
consensus             AGATGTAATTCTTTCCTCCACTTCATCTGTTTGATTATTATGTCATGAATGAAAACGAAG