Contig 009947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018H21Sequence466016757ref|XP_006366527.1|6e-53PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Solanum 669009947 (3)gb|KHG06629.1|1e-55Auxin transporter-like protein 2 [Gossypium arboreum]
JMSF022J18Sequence660002223 (3)362009947 (3)gb|KDP24475.1|1e-22hypothetical protein JCGZ_25039 [Jatropha curcas]
JMSF025B01Sequence680002223 (3)ref|NP_001233919.1|2e-104LAX1 protein [Solanum lycopersicum] ref|XP_010325706.1| PREDICTED: LAX1 protein 641009947 (3)ref|XP_011077572.1|3e-88PREDICTED: auxin transporter-like protein 2 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF025B01+                                           TCCCCAAATCCGCCTGGAGAGACGCCG
rJMSF018H21+                                                             GAGACGCCG
                      ____________________________________________________________
consensus                                              TCCCCAAATCCGCCTGGAGAGACGCCG
 
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rJMSF025B01+          CCGTCATCCTCATGNTCATCCACCAGTTTATTACATTCGGGTTCGCGTGCACGCCGTTGT
rJMSF018H21+          CCGTCATCNTCATGCTCATCCACCAGTTTATTACATTCGGGTTCGCGTGCACGCCGTTGT
                      ____________________________________________________________
consensus             CCGTCATCCTCATGCTCATCCACCAGTTTATTACATTCGGGTTCGCGTGCACGCCGTTGT
 
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rJMSF025B01+          ACTTCGTGTGGGAGAAGGTGATAGGGATGCACGACACGAGAAGCATTTGTGTGAGGGCCC
rJMSF018H21+          ACTTNGTGTGGGNGAAGGTGATAGGGATGCACGACACGAGAAGCATTTGTGTGAGGGCCC
                      ____________________________________________________________
consensus             ACTTCGTGTGGGAGAAGGTGATAGGGATGCACGACACGAGAAGCATTTGTGTGAGGGCCC
 
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rJMSF025B01+          TGGCTAGGCTGCCCGTGGTCATACCCATATGGTTNTTGGCCATCATTTTCCCCTTTTTNG
rJMSF018H21+          TGGNTAGGCTGCCCGNGGTCATACCCATANGGTTTTTGGCCATCATNTTCCCCTTTTTNG
                      ____________________________________________________________
consensus             TGGCTAGGCTGCCCGTGGTCATACCCATATGGTTTTTGGCCATCATTTTCCCCTTTTTNG
 
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rJMSF025B01+          GCCCCATCAANTNTGCCGTTGGNGCCCTCCTCGTTAGCTTCACCGTTTACATCATCCCGT
rJMSF018H21+          GCCCCATCAACTTTGCCGTTGGNGCCCTCCTCGTTAGATTCACCGTNTACATCATCCCGT
                      ____________________________________________________________
consensus             GCCCCATCAACTTTGCCGTTGGNGCCCTCCTCGTTAGCTTCACCGTTTACATCATCCCGT
 
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rJMSF022J18+                         TCACATACCGGAAAGCCNCCNCNCGACAGAATGNTGCAGNGAAGC
rJMSF025B01+          NTNTCGNTCATATGCTCACATACCGGAAAGCCGCCGCACGACAGAATGCTGCAGAGAAGC
rJMSF018H21+          NTCTCGCTCATATGNTCACATACCGGAAANCCGCCNCACGACAGAATGNTGCAGAGAAGC
                      ____________________________________________________________
consensus             NTCTCGCTCATATGCTCACATACCGGAAAGCCGCCGCACGACAGAATGCTGCAGAGAAGC
 
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rJMSF022J18+          CTCCA-TTTTTNTTGCCAAGCTGGACAGCAGGGTATGCCCTGAACATNTTCANAGNGNGC
rJMSF025B01+          CTCCA-TTTTTNTTGCCAAGCTGGACAGCAGTGTATGCCCTGAACATNTTCATAGTGTGC
rJMSF018H21+          CTCCATTTTTTTTTGCCAAGCTGGACAGCAGNGTATGCCCTGAACATNTTCATAGTGTGC
                      ____________________________________________________________
consensus             CTCCA-TTTTTTTTGCCAAGCTGGACAGCAGTGTATGCCCTGAACATNTTCATAGTGTGC
 
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rJMSF022J18+          TGGGTTTTAGNGGTTGGGTTTGGGTTTGGAGGATGGGCTAGCATGACCAATTTTGTTAAA
rJMSF025B01+          TGGGTTTTAGTGGTTGGGTTTGGGTTTGGAGGATGGGCTAGCATGACCAATTTTGTTAAA
rJMSF018H21+          TGGGTTTTAGTGGTTGGGTTTGGGTTTGGAGGATGGGCTAGCATGACCAATTTTGTTAAA
                      ____________________________________________________________
consensus             TGGGTTTTAGTGGTTGGGTTTGGGTTTGGAGGATGGGCTAGCATGACCAATTTTGTTAAA
 
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rJMSF022J18+          CAAGTTGATACNTTTGGGCTTTTTGCCAAGNGCTACCAGGGCAAGAAGCCNCCGGCCCTT
rJMSF025B01+          CAAGTTGATACATTTGGGCTTTTTGCCAAGTGCTACCAGNGCAAGAAGCCACCGGCCCTT
rJMSF018H21+          CAAGNTGATACATTTGGGCTTTTTGCCAAGTGCTACCAGTGCAAGAAGCCACCGGCCCTT
                      ____________________________________________________________
consensus             CAAGTTGATACATTTGGGCTTTTTGCCAAGTGCTACCAGTGCAAGAAGCCACCGGCCCTT
 
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rJMSF022J18+          NCGCCNCNCGGGGNGCCTAACGCCNCCGGCCNCCNTTAAGCTCCTCGCCGGGGNGATATN
rJMSF025B01+          CCGCCACACGNGGCGCCTAACGCCACCGGCCACCANTAAGCTCCTCGCCGGNGAGATATC
rJMSF018H21+          NCGCCACACGGGGNGCCTAACGCCNCCGGCCACCANTAAGCTCCTCGCCGGNGAGATATC
                      ____________________________________________________________
consensus             CCGCCACACGGGGCGCCTAACGCCACCGGCCACCATTAAGCTCCTCGCCGGGGAGATATC
 
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rJMSF022J18+          GATAATCCGAACNTTAATNTNTNTTTNTCCATCTTTTTGTATTA                
rJMSF025B01+          GATAATCCGAACATTAATCTCTCTTTCTCCATCTTTTTGTATTATATA-CATGGGGAGGT
rJMSF018H21+          GATAATCCGAACATTAATCTCTCTTTCTCCATCTTTTTGTATTATATANCATGGGGAGGT
                      ____________________________________________________________
consensus             GATAATCCGAACATTAATCTCTCTTTCTCCATCTTTTTGTATTATATANCATGGGGAGGT
 
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rJMSF025B01+          AGCAACATTTCCCCTA                                            
rJMSF018H21+          AGCAACATTTCCCCTACATGTGCTGTGTGCNAANTTTTTTTTTTTTAGTATTTTGGTTTT
                      ____________________________________________________________
consensus             AGCAACATTTCCCCTACATGTGCTGTGTGCNAANTTTTTTTTTTTTAGTATTTTGGTTTT